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  5. Solyc01g056840.1.1

Solyc01g056840.1.1


Description : no hits & (original description: none)


Gene families : OG0000707 (Archaeplastida) Phylogenetic Tree(s): OG0000707_tree ,
OG_05_0001017 (LandPlants) Phylogenetic Tree(s): OG_05_0001017_tree ,
OG_06_0000818 (SeedPlants) Phylogenetic Tree(s): OG_06_0000818_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc01g056840.1.1
Cluster HCCA: Cluster_1

Target Alias Description ECC score Gene Family Method Actions
ATCG00170 RPOC2 DNA-directed RNA polymerase family protein 0.07 Archaeplastida
ATCG00180 RPOC1 DNA-directed RNA polymerase family protein 0.07 Archaeplastida
Gb_02726 No alias DNA-directed RNA polymerase subunit beta OS=Cycas... 0.03 Archaeplastida
Gb_09031 No alias DNA-directed RNA polymerase subunit beta OS=Cycas... 0.03 Archaeplastida
Gb_09773 No alias DNA-directed RNA polymerase subunit beta OS=Cycas... 0.04 Archaeplastida
Gb_26285 No alias DNA-directed RNA polymerase subunit beta OS=Cycas... 0.04 Archaeplastida
LOC_Os04g16830.1 No alias DNA-directed RNA polymerase subunit beta OS=Oryza sativa... 0.04 Archaeplastida
Solyc07g021220.3.1 No alias DNA-directed RNA polymerase subunit beta OS=Solanum... 0.01 Archaeplastida
Solyc11g007260.1.1 No alias DNA-directed RNA polymerase subunit beta OS=Solanum... 0.04 Archaeplastida
Solyc12g062563.1.1 No alias no hits & (original description: none) 0.01 Archaeplastida
Zm00001e042169_P001 No alias RpoC2 core component plastid-encoded RNA polymerase 0.02 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEP Neighborhood
MF GO:0003735 structural constituent of ribosome IEP Neighborhood
MF GO:0005198 structural molecule activity IEP Neighborhood
CC GO:0005575 cellular_component IEP Neighborhood
CC GO:0005840 ribosome IEP Neighborhood
BP GO:0006091 generation of precursor metabolites and energy IEP Neighborhood
BP GO:0006412 translation IEP Neighborhood
BP GO:0006518 peptide metabolic process IEP Neighborhood
BP GO:0009059 macromolecule biosynthetic process IEP Neighborhood
CC GO:0009507 chloroplast IEP Neighborhood
CC GO:0009536 plastid IEP Neighborhood
CC GO:0016021 integral component of membrane IEP Neighborhood
BP GO:0016043 cellular component organization IEP Neighborhood
BP GO:0017004 cytochrome complex assembly IEP Neighborhood
BP GO:0022607 cellular component assembly IEP Neighborhood
BP GO:0022900 electron transport chain IEP Neighborhood
CC GO:0031224 intrinsic component of membrane IEP Neighborhood
BP GO:0034622 cellular protein-containing complex assembly IEP Neighborhood
BP GO:0034645 cellular macromolecule biosynthetic process IEP Neighborhood
BP GO:0043043 peptide biosynthetic process IEP Neighborhood
CC GO:0043226 organelle IEP Neighborhood
CC GO:0043227 membrane-bounded organelle IEP Neighborhood
CC GO:0043228 non-membrane-bounded organelle IEP Neighborhood
CC GO:0043229 intracellular organelle IEP Neighborhood
CC GO:0043231 intracellular membrane-bounded organelle IEP Neighborhood
CC GO:0043232 intracellular non-membrane-bounded organelle IEP Neighborhood
BP GO:0043603 cellular amide metabolic process IEP Neighborhood
BP GO:0043604 amide biosynthetic process IEP Neighborhood
BP GO:0043933 protein-containing complex subunit organization IEP Neighborhood
BP GO:0044271 cellular nitrogen compound biosynthetic process IEP Neighborhood
CC GO:0044424 intracellular part IEP Neighborhood
CC GO:0044425 membrane part IEP Neighborhood
CC GO:0044444 cytoplasmic part IEP Neighborhood
CC GO:0044464 cell part IEP Neighborhood
BP GO:0065003 protein-containing complex assembly IEP Neighborhood
BP GO:1901566 organonitrogen compound biosynthetic process IEP Neighborhood
CC GO:1990904 ribonucleoprotein complex IEP Neighborhood

No InterPro domains available for this sequence

No external refs found!