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  5. Solyc01g060040.3.1

Solyc01g060040.3.1


Description : no hits & (original description: none)


Gene families : OG0004576 (Archaeplastida) Phylogenetic Tree(s): OG0004576_tree ,
OG_05_0004230 (LandPlants) Phylogenetic Tree(s): OG_05_0004230_tree ,
OG_06_0004076 (SeedPlants) Phylogenetic Tree(s): OG_06_0004076_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc01g060040.3.1
Cluster HCCA: Cluster_173

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00057p00026390 evm_27.TU.AmTr_v1... Dynein assembly factor with WDR repeat domains 1... 0.02 Archaeplastida
AT5G49430 No alias WD40/YVTN repeat-like-containing domain;Bromodomain 0.11 Archaeplastida
Cpa|evm.model.tig00000808.30 No alias Dynein assembly factor with WDR repeat domains 1... 0.02 Archaeplastida
Cre02.g078150 No alias No description available 0.02 Archaeplastida
GSVIVT01028117001 No alias Dynein assembly factor with WDR repeat domains 1... 0.06 Archaeplastida
GSVIVT01035014001 No alias Dynein assembly factor with WDR repeat domains 1... 0.12 Archaeplastida
Gb_35200 No alias Dynein assembly factor with WDR repeat domains 1... 0.05 Archaeplastida
LOC_Os03g19340.1 No alias no hits & (original description: none) 0.09 Archaeplastida
MA_58934g0010 No alias no hits & (original description: none) 0.07 Archaeplastida
Mp2g00710.1 No alias Dynein assembly factor with WDR repeat domains 1... 0.07 Archaeplastida
Zm00001e025834_P004 No alias Dynein assembly factor with WDR repeat domains 1... 0.11 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0000184 nuclear-transcribed mRNA catabolic process, nonsense-mediated decay IEP Neighborhood
BP GO:0000956 nuclear-transcribed mRNA catabolic process IEP Neighborhood
MF GO:0003676 nucleic acid binding IEP Neighborhood
MF GO:0003677 DNA binding IEP Neighborhood
MF GO:0003684 damaged DNA binding IEP Neighborhood
MF GO:0003723 RNA binding IEP Neighborhood
MF GO:0003916 DNA topoisomerase activity IEP Neighborhood
MF GO:0003917 DNA topoisomerase type I activity IEP Neighborhood
MF GO:0004386 helicase activity IEP Neighborhood
MF GO:0004527 exonuclease activity IEP Neighborhood
MF GO:0005524 ATP binding IEP Neighborhood
BP GO:0006259 DNA metabolic process IEP Neighborhood
BP GO:0006265 DNA topological change IEP Neighborhood
BP GO:0006401 RNA catabolic process IEP Neighborhood
BP GO:0006402 mRNA catabolic process IEP Neighborhood
MF GO:0008270 zinc ion binding IEP Neighborhood
MF GO:0008641 ubiquitin-like modifier activating enzyme activity IEP Neighborhood
BP GO:0009892 negative regulation of metabolic process IEP Neighborhood
BP GO:0010605 negative regulation of macromolecule metabolic process IEP Neighborhood
BP GO:0010629 negative regulation of gene expression IEP Neighborhood
MF GO:0016853 isomerase activity IEP Neighborhood
MF GO:0016877 ligase activity, forming carbon-sulfur bonds IEP Neighborhood
MF GO:0043015 gamma-tubulin binding IEP Neighborhood
MF GO:0046914 transition metal ion binding IEP Neighborhood
BP GO:0071103 DNA conformation change IEP Neighborhood
MF GO:0097159 organic cyclic compound binding IEP Neighborhood
MF GO:1901363 heterocyclic compound binding IEP Neighborhood
InterPro domains Description Start Stop
IPR001487 Bromodomain 973 1020
No external refs found!