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  5. Solyc01g065530.3.1

Solyc01g065530.3.1


Description : COB cellulose microfibrils and hemicellulose interaction protein


Gene families : OG0001802 (Archaeplastida) Phylogenetic Tree(s): OG0001802_tree ,
OG_05_0001593 (LandPlants) Phylogenetic Tree(s): OG_05_0001593_tree ,
OG_06_0001646 (SeedPlants) Phylogenetic Tree(s): OG_06_0001646_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc01g065530.3.1
Cluster HCCA: Cluster_44

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00057p00111550 evm_27.TU.AmTr_v1... Cell wall.cellulose.synthesis.cellulose microfibrils and... 0.06 Archaeplastida
AMTR_s00066p00182490 evm_27.TU.AmTr_v1... Cell wall.cellulose.synthesis.cellulose microfibrils and... 0.05 Archaeplastida
AT3G20580 COBL10 COBRA-like protein 10 precursor 0.05 Archaeplastida
GSVIVT01012641001 No alias Cell wall.cellulose.synthesis.cellulose microfibrils and... 0.03 Archaeplastida
GSVIVT01035050001 No alias Cell wall.cellulose.synthesis.cellulose microfibrils and... 0.13 Archaeplastida
Gb_32178 No alias COB cellulose microfibrils and hemicellulose interaction protein 0.08 Archaeplastida
LOC_Os03g18910.1 No alias COB cellulose microfibrils and hemicellulose interaction protein 0.1 Archaeplastida
LOC_Os06g47110.1 No alias COB cellulose microfibrils and hemicellulose interaction protein 0.03 Archaeplastida
LOC_Os07g49080.1 No alias COB cellulose microfibrils and hemicellulose interaction protein 0.03 Archaeplastida
Mp1g17600.1 No alias COB cellulose microfibrils and hemicellulose interaction protein 0.03 Archaeplastida
Mp1g18890.1 No alias COB cellulose microfibrils and hemicellulose interaction protein 0.04 Archaeplastida
Pp3c14_12030V3.1 No alias COBRA-like protein-7 precursor 0.02 Archaeplastida
Pp3c17_6920V3.1 No alias COBRA-like protein-7 precursor 0.04 Archaeplastida
Pp3c1_25450V3.1 No alias COBRA-like protein-7 precursor 0.04 Archaeplastida
Pp3c25_1920V3.1 No alias COBRA-like protein-7 precursor 0.03 Archaeplastida
Pp3c2_18020V3.1 No alias COBRA-like protein-7 precursor 0.03 Archaeplastida
Pp3c6_14750V3.1 No alias COBRA-like protein-7 precursor 0.06 Archaeplastida
Smo126731 No alias Cell wall.cellulose.synthesis.cellulose microfibrils and... 0.04 Archaeplastida
Zm00001e001386_P001 No alias COB cellulose microfibrils and hemicellulose interaction protein 0.09 Archaeplastida
Zm00001e035133_P001 No alias COB cellulose microfibrils and hemicellulose interaction protein 0.02 Archaeplastida

Type GO Term Name Evidence Source
BP GO:0010215 cellulose microfibril organization IEA Interproscan
CC GO:0031225 anchored component of membrane IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003824 catalytic activity IEP Neighborhood
MF GO:0004553 hydrolase activity, hydrolyzing O-glycosyl compounds IEP Neighborhood
MF GO:0004842 ubiquitin-protein transferase activity IEP Neighborhood
CC GO:0005576 extracellular region IEP Neighborhood
CC GO:0005618 cell wall IEP Neighborhood
BP GO:0005975 carbohydrate metabolic process IEP Neighborhood
BP GO:0005976 polysaccharide metabolic process IEP Neighborhood
BP GO:0006073 cellular glucan metabolic process IEP Neighborhood
BP GO:0006355 regulation of transcription, DNA-templated IEP Neighborhood
BP GO:0007034 vacuolar transport IEP Neighborhood
BP GO:0009889 regulation of biosynthetic process IEP Neighborhood
BP GO:0010468 regulation of gene expression IEP Neighborhood
BP GO:0010556 regulation of macromolecule biosynthetic process IEP Neighborhood
CC GO:0016459 myosin complex IEP Neighborhood
MF GO:0016740 transferase activity IEP Neighborhood
MF GO:0016757 transferase activity, transferring glycosyl groups IEP Neighborhood
MF GO:0016758 transferase activity, transferring hexosyl groups IEP Neighborhood
MF GO:0016762 xyloglucan:xyloglucosyl transferase activity IEP Neighborhood
MF GO:0016787 hydrolase activity IEP Neighborhood
MF GO:0016798 hydrolase activity, acting on glycosyl bonds IEP Neighborhood
BP GO:0019219 regulation of nucleobase-containing compound metabolic process IEP Neighborhood
BP GO:0019222 regulation of metabolic process IEP Neighborhood
MF GO:0019787 ubiquitin-like protein transferase activity IEP Neighborhood
CC GO:0030312 external encapsulating structure IEP Neighborhood
BP GO:0031323 regulation of cellular metabolic process IEP Neighborhood
BP GO:0031326 regulation of cellular biosynthetic process IEP Neighborhood
BP GO:0043170 macromolecule metabolic process IEP Neighborhood
BP GO:0044042 glucan metabolic process IEP Neighborhood
BP GO:0044260 cellular macromolecule metabolic process IEP Neighborhood
BP GO:0044262 cellular carbohydrate metabolic process IEP Neighborhood
BP GO:0044264 cellular polysaccharide metabolic process IEP Neighborhood
MF GO:0046527 glucosyltransferase activity IEP Neighborhood
CC GO:0048046 apoplast IEP Neighborhood
BP GO:0050789 regulation of biological process IEP Neighborhood
BP GO:0050794 regulation of cellular process IEP Neighborhood
BP GO:0051171 regulation of nitrogen compound metabolic process IEP Neighborhood
BP GO:0051252 regulation of RNA metabolic process IEP Neighborhood
BP GO:0060255 regulation of macromolecule metabolic process IEP Neighborhood
MF GO:0061630 ubiquitin protein ligase activity IEP Neighborhood
MF GO:0061659 ubiquitin-like protein ligase activity IEP Neighborhood
BP GO:0065007 biological regulation IEP Neighborhood
BP GO:0080090 regulation of primary metabolic process IEP Neighborhood
BP GO:1903506 regulation of nucleic acid-templated transcription IEP Neighborhood
BP GO:2000112 regulation of cellular macromolecule biosynthetic process IEP Neighborhood
BP GO:2001141 regulation of RNA biosynthetic process IEP Neighborhood
InterPro domains Description Start Stop
IPR006918 COBRA_pln 222 401
No external refs found!