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  5. Solyc01g068000.4.1

Solyc01g068000.4.1


Description : transcription factor (DBP)


Gene families : OG0000802 (Archaeplastida) Phylogenetic Tree(s): OG0000802_tree ,
OG_05_0009795 (LandPlants) Phylogenetic Tree(s): OG_05_0009795_tree ,
OG_06_0007014 (SeedPlants) Phylogenetic Tree(s): OG_06_0007014_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc01g068000.4.1
Cluster HCCA: Cluster_44

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00003p00195190 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.DBP... 0.06 Archaeplastida
AMTR_s00122p00108900 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.DBP... 0.03 Archaeplastida
AT3G62260 No alias Protein phosphatase 2C family protein 0.12 Archaeplastida
GSVIVT01017639001 No alias RNA biosynthesis.transcriptional activation.DBP... 0.03 Archaeplastida
GSVIVT01028192001 No alias RNA biosynthesis.transcriptional activation.DBP... 0.14 Archaeplastida
Gb_16142 No alias transcription factor (DBP). clade G phosphatase 0.05 Archaeplastida
Gb_40616 No alias transcription factor (DBP). clade G phosphatase 0.03 Archaeplastida
LOC_Os01g19130.1 No alias transcription factor (DBP) 0.04 Archaeplastida
Pp3c2_10660V3.1 No alias Protein phosphatase 2C family protein 0.04 Archaeplastida
Pp3c6_3580V3.1 No alias DNA-binding protein phosphatase 1 0.02 Archaeplastida
Smo102683 No alias RNA biosynthesis.transcriptional activation.DBP... 0.06 Archaeplastida
Solyc06g009390.3.1 No alias transcription factor (DBP) 0.03 Archaeplastida
Zm00001e025432_P001 No alias transcription factor (DBP) 0.05 Archaeplastida
Zm00001e040337_P001 No alias transcription factor (DBP) 0.05 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0003824 catalytic activity IEA Interproscan
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Type GO Term Name Evidence Source
CC GO:0000813 ESCRT I complex IEP Neighborhood
MF GO:0004672 protein kinase activity IEP Neighborhood
MF GO:0004842 ubiquitin-protein transferase activity IEP Neighborhood
BP GO:0006464 cellular protein modification process IEP Neighborhood
BP GO:0006468 protein phosphorylation IEP Neighborhood
BP GO:0007034 vacuolar transport IEP Neighborhood
BP GO:0010215 cellulose microfibril organization IEP Neighborhood
BP GO:0016197 endosomal transport IEP Neighborhood
MF GO:0016301 kinase activity IEP Neighborhood
BP GO:0016310 phosphorylation IEP Neighborhood
MF GO:0016740 transferase activity IEP Neighborhood
MF GO:0016773 phosphotransferase activity, alcohol group as acceptor IEP Neighborhood
BP GO:0019538 protein metabolic process IEP Neighborhood
MF GO:0019787 ubiquitin-like protein transferase activity IEP Neighborhood
BP GO:0030198 extracellular matrix organization IEP Neighborhood
CC GO:0031225 anchored component of membrane IEP Neighborhood
BP GO:0032509 endosome transport via multivesicular body sorting pathway IEP Neighborhood
BP GO:0036211 protein modification process IEP Neighborhood
CC GO:0036452 ESCRT complex IEP Neighborhood
BP GO:0043062 extracellular structure organization IEP Neighborhood
BP GO:0043412 macromolecule modification IEP Neighborhood
BP GO:0044260 cellular macromolecule metabolic process IEP Neighborhood
BP GO:0044267 cellular protein metabolic process IEP Neighborhood
CC GO:0044433 cytoplasmic vesicle part IEP Neighborhood
CC GO:0044440 endosomal part IEP Neighborhood
MF GO:0061630 ubiquitin protein ligase activity IEP Neighborhood
MF GO:0061659 ubiquitin-like protein ligase activity IEP Neighborhood
BP GO:0071985 multivesicular body sorting pathway IEP Neighborhood
MF GO:0140096 catalytic activity, acting on a protein IEP Neighborhood
InterPro domains Description Start Stop
IPR001932 PPM-type_phosphatase_dom 1 250
No external refs found!