Solyc01g068330.4.1

Description : Cell division control protein 48 homolog C OS=Arabidopsis thaliana (sp|q9ss94|cd48c_arath : 656.0)

Gene families : OG0000169 (Archaeplastida) Phylogenetic Tree(s): OG0000169_tree ,
OG_05_0006701 (LandPlants) Phylogenetic Tree(s): OG_05_0006701_tree ,
OG_06_0006831 (SeedPlants) Phylogenetic Tree(s): OG_06_0006831_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Solyc01g068330.4.1
Cluster	HCCA: Cluster_233

Target	Alias	Description	ECC score	Gene Family Method
AT3G01610	emb1354, CDC48C	cell division cycle 48C	0.07	Archaeplastida
AT3G53230	No alias	ATPase, AAA-type, CDC48 protein	0.03	Archaeplastida
AT3G56690	CIP111	Cam interacting protein 111	0.04	Archaeplastida
Cre09.g398550	No alias	Cell division control protein 48 homolog C...	0.03	Archaeplastida
Cre17.g700300	No alias	Cell division control protein 48 homolog B...	0.02	Archaeplastida
GSVIVT01007689001	No alias	Cell division cycle protein 48 homolog OS=Glycine max	0.04	Archaeplastida
GSVIVT01025783001	No alias	Calmodulin-interacting protein 111 OS=Arabidopsis thaliana	0.03	Archaeplastida
LOC_Os04g52690.3	No alias	component Pex6 of Pex1-Pex6 subcomplex	0.02	Archaeplastida
LOC_Os05g31220.1	No alias	Cell division control protein 48 homolog B...	0.03	Archaeplastida
LOC_Os06g01980.1	No alias	Cell division control protein 48 homolog C...	0.05	Archaeplastida
LOC_Os11g11340.1	No alias	Calmodulin-interacting protein 111 OS=Arabidopsis...	0.04	Archaeplastida
MA_10168585g0010	No alias	platform ATPase (CDC48)	0.02	Archaeplastida
Mp2g13350.1	No alias	Calmodulin-interacting protein 111 OS=Arabidopsis...	0.03	Archaeplastida
Pp3c18_11480V3.1	No alias	cell division cycle 48C	0.03	Archaeplastida
Pp3c26_8300V3.1	No alias	ATPase, AAA-type, CDC48 protein	0.04	Archaeplastida
Pp3c6_25280V3.1	No alias	Cam interacting protein 111	0.03	Archaeplastida
Zm00001e000416_P002	No alias	platform ATPase (CDC48)	0.07	Archaeplastida
Zm00001e022089_P003	No alias	no hits & (original description: none)	0.04	Archaeplastida
Zm00001e035514_P002	No alias	Cell division control protein 48 homolog C...	0.04	Archaeplastida
Zm00001e036688_P001	No alias	Cell division control protein 48 homolog C...	0.06	Archaeplastida
Zm00001e041158_P001	No alias	Cell division control protein 48 homolog B...	0.03	Archaeplastida

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0005524	ATP binding	IEA	Interproscan
MF	GO:0008144	drug binding	None	Extended
MF	GO:0017076	purine nucleotide binding	None	Extended
MF	GO:0030554	adenyl nucleotide binding	None	Extended
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032559	adenyl ribonucleotide binding	None	Extended
MF	GO:0035639	purine ribonucleoside triphosphate binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0003676	nucleic acid binding	IEP	Neighborhood
MF	GO:0003723	RNA binding	IEP	Neighborhood
MF	GO:0003724	RNA helicase activity	IEP	Neighborhood
MF	GO:0004386	helicase activity	IEP	Neighborhood
MF	GO:0004484	mRNA guanylyltransferase activity	IEP	Neighborhood
MF	GO:0004525	ribonuclease III activity	IEP	Neighborhood
MF	GO:0004721	phosphoprotein phosphatase activity	IEP	Neighborhood
MF	GO:0005515	protein binding	IEP	Neighborhood
CC	GO:0005730	nucleolus	IEP	Neighborhood
BP	GO:0006370	7-methylguanosine mRNA capping	IEP	Neighborhood
BP	GO:0006396	RNA processing	IEP	Neighborhood
MF	GO:0008134	transcription factor binding	IEP	Neighborhood
MF	GO:0008138	protein tyrosine/serine/threonine phosphatase activity	IEP	Neighborhood
MF	GO:0008192	RNA guanylyltransferase activity	IEP	Neighborhood
BP	GO:0009452	7-methylguanosine RNA capping	IEP	Neighborhood
BP	GO:0016070	RNA metabolic process	IEP	Neighborhood
BP	GO:0016311	dephosphorylation	IEP	Neighborhood
MF	GO:0016462	pyrophosphatase activity	IEP	Neighborhood
MF	GO:0016772	transferase activity, transferring phosphorus-containing groups	IEP	Neighborhood
MF	GO:0016779	nucleotidyltransferase activity	IEP	Neighborhood
MF	GO:0016817	hydrolase activity, acting on acid anhydrides	IEP	Neighborhood
MF	GO:0016818	hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides	IEP	Neighborhood
MF	GO:0017111	nucleoside-triphosphatase activity	IEP	Neighborhood
BP	GO:0022613	ribonucleoprotein complex biogenesis	IEP	Neighborhood
MF	GO:0031072	heat shock protein binding	IEP	Neighborhood
MF	GO:0032296	double-stranded RNA-specific ribonuclease activity	IEP	Neighborhood
BP	GO:0036260	RNA capping	IEP	Neighborhood
BP	GO:0042254	ribosome biogenesis	IEP	Neighborhood
BP	GO:0044085	cellular component biogenesis	IEP	Neighborhood
CC	GO:0044428	nuclear part	IEP	Neighborhood
MF	GO:0051082	unfolded protein binding	IEP	Neighborhood
MF	GO:0070568	guanylyltransferase activity	IEP	Neighborhood
BP	GO:0090304	nucleic acid metabolic process	IEP	Neighborhood
MF	GO:0140098	catalytic activity, acting on RNA	IEP	Neighborhood

InterPro domains	Description	Start	Stop
IPR003959	ATPase_AAA_core	33	190
IPR003959	ATPase_AAA_core	351	479

External Links

No external refs found!

Solyc01g068330.4.1

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation