Aliases : evm_27.TU.AmTr_v1.0_scaffold00021.242
Description : Pentatricopeptide repeat-containing protein At3g49240, mitochondrial OS=Arabidopsis thaliana
Gene families : OG0004773 (Archaeplastida) Phylogenetic Tree(s): OG0004773_tree ,
OG_05_0003293 (LandPlants) Phylogenetic Tree(s): OG_05_0003293_tree ,
OG_06_0001998 (SeedPlants) Phylogenetic Tree(s): OG_06_0001998_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
Type | Description | Actions |
---|---|---|
Neighborhood | HRR: AMTR_s00021p00236970 | |
Cluster | HCCA: Cluster_235 |
Target | Alias | Description | ECC score | Gene Family Method | Actions |
---|---|---|---|---|---|
GSVIVT01023159001 | No alias | Pentatricopeptide repeat-containing protein At1g10270... | 0.06 | Archaeplastida | |
Gb_33747 | No alias | Pentatricopeptide repeat-containing protein At3g49240,... | 0.03 | Archaeplastida | |
Gb_33759 | No alias | Pentatricopeptide repeat-containing protein At3g49240,... | 0.03 | Archaeplastida | |
LOC_Os05g30240.1 | No alias | Pentatricopeptide repeat-containing protein At1g10270... | 0.03 | Archaeplastida | |
LOC_Os11g24570.1 | No alias | Pentatricopeptide repeat-containing protein At3g49240,... | 0.04 | Archaeplastida | |
MA_118904g0010 | No alias | Pentatricopeptide repeat-containing protein At1g10270... | 0.09 | Archaeplastida | |
Solyc01g103160.3.1 | No alias | Pentatricopeptide repeat-containing protein At1g10270... | 0.03 | Archaeplastida | |
Solyc03g083280.4.1 | No alias | Pentatricopeptide repeat-containing protein At3g49240,... | 0.06 | Archaeplastida |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
No GO annotation available for this sequence |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
BP | GO:0000041 | transition metal ion transport | IEP | Neighborhood |
MF | GO:0000166 | nucleotide binding | IEP | Neighborhood |
MF | GO:0000175 | 3'-5'-exoribonuclease activity | IEP | Neighborhood |
MF | GO:0001882 | nucleoside binding | IEP | Neighborhood |
MF | GO:0001883 | purine nucleoside binding | IEP | Neighborhood |
MF | GO:0003674 | molecular_function | IEP | Neighborhood |
MF | GO:0003676 | nucleic acid binding | IEP | Neighborhood |
MF | GO:0003677 | DNA binding | IEP | Neighborhood |
MF | GO:0003723 | RNA binding | IEP | Neighborhood |
MF | GO:0003746 | translation elongation factor activity | IEP | Neighborhood |
MF | GO:0003887 | DNA-directed DNA polymerase activity | IEP | Neighborhood |
MF | GO:0003899 | DNA-directed 5'-3' RNA polymerase activity | IEP | Neighborhood |
MF | GO:0003924 | GTPase activity | IEP | Neighborhood |
MF | GO:0003937 | IMP cyclohydrolase activity | IEP | Neighborhood |
MF | GO:0004386 | helicase activity | IEP | Neighborhood |
MF | GO:0004518 | nuclease activity | IEP | Neighborhood |
MF | GO:0004527 | exonuclease activity | IEP | Neighborhood |
MF | GO:0004532 | exoribonuclease activity | IEP | Neighborhood |
MF | GO:0004643 | phosphoribosylaminoimidazolecarboxamide formyltransferase activity | IEP | Neighborhood |
MF | GO:0004832 | valine-tRNA ligase activity | IEP | Neighborhood |
MF | GO:0005381 | iron ion transmembrane transporter activity | IEP | Neighborhood |
MF | GO:0005488 | binding | IEP | Neighborhood |
MF | GO:0005524 | ATP binding | IEP | Neighborhood |
MF | GO:0005525 | GTP binding | IEP | Neighborhood |
CC | GO:0005667 | transcription factor complex | IEP | Neighborhood |
CC | GO:0005669 | transcription factor TFIID complex | IEP | Neighborhood |
CC | GO:0005741 | mitochondrial outer membrane | IEP | Neighborhood |
CC | GO:0005853 | eukaryotic translation elongation factor 1 complex | IEP | Neighborhood |
BP | GO:0006139 | nucleobase-containing compound metabolic process | IEP | Neighborhood |
BP | GO:0006351 | transcription, DNA-templated | IEP | Neighborhood |
BP | GO:0006396 | RNA processing | IEP | Neighborhood |
BP | GO:0006414 | translational elongation | IEP | Neighborhood |
BP | GO:0006438 | valyl-tRNA aminoacylation | IEP | Neighborhood |
BP | GO:0006725 | cellular aromatic compound metabolic process | IEP | Neighborhood |
BP | GO:0006807 | nitrogen compound metabolic process | IEP | Neighborhood |
BP | GO:0006826 | iron ion transport | IEP | Neighborhood |
MF | GO:0008026 | ATP-dependent helicase activity | IEP | Neighborhood |
MF | GO:0008144 | drug binding | IEP | Neighborhood |
BP | GO:0008150 | biological_process | IEP | Neighborhood |
BP | GO:0008152 | metabolic process | IEP | Neighborhood |
MF | GO:0008408 | 3'-5' exonuclease activity | IEP | Neighborhood |
BP | GO:0009058 | biosynthetic process | IEP | Neighborhood |
BP | GO:0009059 | macromolecule biosynthetic process | IEP | Neighborhood |
BP | GO:0009987 | cellular process | IEP | Neighborhood |
MF | GO:0015093 | ferrous iron transmembrane transporter activity | IEP | Neighborhood |
BP | GO:0015684 | ferrous iron transport | IEP | Neighborhood |
CC | GO:0015934 | large ribosomal subunit | IEP | Neighborhood |
BP | GO:0016070 | RNA metabolic process | IEP | Neighborhood |
MF | GO:0016462 | pyrophosphatase activity | IEP | Neighborhood |
MF | GO:0016740 | transferase activity | IEP | Neighborhood |
MF | GO:0016742 | hydroxymethyl-, formyl- and related transferase activity | IEP | Neighborhood |
MF | GO:0016772 | transferase activity, transferring phosphorus-containing groups | IEP | Neighborhood |
MF | GO:0016779 | nucleotidyltransferase activity | IEP | Neighborhood |
MF | GO:0016787 | hydrolase activity | IEP | Neighborhood |
MF | GO:0016796 | exonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters | IEP | Neighborhood |
MF | GO:0016814 | hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amidines | IEP | Neighborhood |
MF | GO:0016817 | hydrolase activity, acting on acid anhydrides | IEP | Neighborhood |
MF | GO:0016818 | hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides | IEP | Neighborhood |
MF | GO:0016896 | exoribonuclease activity, producing 5'-phosphomonoesters | IEP | Neighborhood |
MF | GO:0017076 | purine nucleotide binding | IEP | Neighborhood |
MF | GO:0017111 | nucleoside-triphosphatase activity | IEP | Neighborhood |
BP | GO:0018130 | heterocycle biosynthetic process | IEP | Neighborhood |
MF | GO:0019001 | guanyl nucleotide binding | IEP | Neighborhood |
MF | GO:0019238 | cyclohydrolase activity | IEP | Neighborhood |
BP | GO:0019438 | aromatic compound biosynthetic process | IEP | Neighborhood |
CC | GO:0019867 | outer membrane | IEP | Neighborhood |
MF | GO:0022890 | inorganic cation transmembrane transporter activity | IEP | Neighborhood |
BP | GO:0030001 | metal ion transport | IEP | Neighborhood |
MF | GO:0030554 | adenyl nucleotide binding | IEP | Neighborhood |
CC | GO:0031090 | organelle membrane | IEP | Neighborhood |
CC | GO:0031966 | mitochondrial membrane | IEP | Neighborhood |
CC | GO:0031968 | organelle outer membrane | IEP | Neighborhood |
MF | GO:0032549 | ribonucleoside binding | IEP | Neighborhood |
MF | GO:0032550 | purine ribonucleoside binding | IEP | Neighborhood |
MF | GO:0032553 | ribonucleotide binding | IEP | Neighborhood |
MF | GO:0032555 | purine ribonucleotide binding | IEP | Neighborhood |
MF | GO:0032559 | adenyl ribonucleotide binding | IEP | Neighborhood |
MF | GO:0032561 | guanyl ribonucleotide binding | IEP | Neighborhood |
BP | GO:0032774 | RNA biosynthetic process | IEP | Neighborhood |
MF | GO:0034061 | DNA polymerase activity | IEP | Neighborhood |
MF | GO:0034062 | 5'-3' RNA polymerase activity | IEP | Neighborhood |
BP | GO:0034641 | cellular nitrogen compound metabolic process | IEP | Neighborhood |
BP | GO:0034645 | cellular macromolecule biosynthetic process | IEP | Neighborhood |
BP | GO:0034654 | nucleobase-containing compound biosynthetic process | IEP | Neighborhood |
BP | GO:0034660 | ncRNA metabolic process | IEP | Neighborhood |
MF | GO:0035639 | purine ribonucleoside triphosphate binding | IEP | Neighborhood |
MF | GO:0036094 | small molecule binding | IEP | Neighborhood |
MF | GO:0042623 | ATPase activity, coupled | IEP | Neighborhood |
MF | GO:0043167 | ion binding | IEP | Neighborhood |
MF | GO:0043168 | anion binding | IEP | Neighborhood |
BP | GO:0043170 | macromolecule metabolic process | IEP | Neighborhood |
BP | GO:0044237 | cellular metabolic process | IEP | Neighborhood |
BP | GO:0044238 | primary metabolic process | IEP | Neighborhood |
BP | GO:0044249 | cellular biosynthetic process | IEP | Neighborhood |
BP | GO:0044260 | cellular macromolecule metabolic process | IEP | Neighborhood |
BP | GO:0044271 | cellular nitrogen compound biosynthetic process | IEP | Neighborhood |
CC | GO:0044391 | ribosomal subunit | IEP | Neighborhood |
CC | GO:0044422 | organelle part | IEP | Neighborhood |
CC | GO:0044424 | intracellular part | IEP | Neighborhood |
CC | GO:0044428 | nuclear part | IEP | Neighborhood |
CC | GO:0044446 | intracellular organelle part | IEP | Neighborhood |
CC | GO:0044464 | cell part | IEP | Neighborhood |
CC | GO:0044798 | nuclear transcription factor complex | IEP | Neighborhood |
BP | GO:0046483 | heterocycle metabolic process | IEP | Neighborhood |
MF | GO:0046873 | metal ion transmembrane transporter activity | IEP | Neighborhood |
MF | GO:0046915 | transition metal ion transmembrane transporter activity | IEP | Neighborhood |
MF | GO:0070035 | purine NTP-dependent helicase activity | IEP | Neighborhood |
BP | GO:0070838 | divalent metal ion transport | IEP | Neighborhood |
BP | GO:0071704 | organic substance metabolic process | IEP | Neighborhood |
MF | GO:0072509 | divalent inorganic cation transmembrane transporter activity | IEP | Neighborhood |
BP | GO:0072511 | divalent inorganic cation transport | IEP | Neighborhood |
BP | GO:0090304 | nucleic acid metabolic process | IEP | Neighborhood |
CC | GO:0090575 | RNA polymerase II transcription factor complex | IEP | Neighborhood |
MF | GO:0097159 | organic cyclic compound binding | IEP | Neighborhood |
MF | GO:0097367 | carbohydrate derivative binding | IEP | Neighborhood |
BP | GO:0097659 | nucleic acid-templated transcription | IEP | Neighborhood |
MF | GO:0097747 | RNA polymerase activity | IEP | Neighborhood |
CC | GO:0098588 | bounding membrane of organelle | IEP | Neighborhood |
CC | GO:0098805 | whole membrane | IEP | Neighborhood |
MF | GO:0140097 | catalytic activity, acting on DNA | IEP | Neighborhood |
MF | GO:0140098 | catalytic activity, acting on RNA | IEP | Neighborhood |
MF | GO:1901265 | nucleoside phosphate binding | IEP | Neighborhood |
BP | GO:1901360 | organic cyclic compound metabolic process | IEP | Neighborhood |
BP | GO:1901362 | organic cyclic compound biosynthetic process | IEP | Neighborhood |
MF | GO:1901363 | heterocyclic compound binding | IEP | Neighborhood |
BP | GO:1901576 | organic substance biosynthetic process | IEP | Neighborhood |
No external refs found! |