Solyc01g079690.4.1

Description : chromatin remodeling factor (Snf2)

Gene families : OG0000082 (Archaeplastida) Phylogenetic Tree(s): OG0000082_tree ,
OG_05_0001935 (LandPlants) Phylogenetic Tree(s): OG_05_0001935_tree ,
OG_06_0002288 (SeedPlants) Phylogenetic Tree(s): OG_06_0002288_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Solyc01g079690.4.1
Cluster	HCCA: Cluster_2

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00057p00173840	evm_27.TU.AmTr_v1...	Chromatin organisation.chromatin remodeling...	0.02	Archaeplastida
AMTR_s00059p00063470	evm_27.TU.AmTr_v1...	Chromatin organisation.DNA methylation.RNA-independent...	0.06	Archaeplastida
AMTR_s00148p00090060	evm_27.TU.AmTr_v1...	Helicase protein MOM1 OS=Arabidopsis thaliana	0.03	Archaeplastida
AT1G08060	MOM1, MOM	ATP-dependent helicase family protein	0.03	Archaeplastida
AT2G13370	CHR5	chromatin remodeling 5	0.03	Archaeplastida
AT2G25170	PKL, GYM, CHR6,...	chromatin remodeling factor CHD3 (PICKLE)	0.04	Archaeplastida
AT2G28290	SYD, CHR3	P-loop containing nucleoside triphosphate hydrolases...	0.03	Archaeplastida
AT2G46020	CHA2, CHR2, BRM, ATBRM	transcription regulatory protein SNF2, putative	0.03	Archaeplastida
AT5G18620	CHR17	chromatin remodeling factor17	0.03	Archaeplastida
AT5G44800	PKR1, CHR4	chromatin remodeling 4	0.03	Archaeplastida
AT5G66750	CHR01, CHR1,...	chromatin remodeling 1	0.02	Archaeplastida
Cpa\|evm.model.tig00000217.25	No alias	Chromatin structure-remodeling complex protein SYD...	0.01	Archaeplastida
Cre03.g158550	No alias	CHD3-type chromatin-remodeling factor PICKLE...	0.02	Archaeplastida
Cre03.g179300	No alias	RNA biosynthesis.RNA polymerase II-dependent...	0.01	Archaeplastida
GSVIVT01012117001	No alias	RNA biosynthesis.transcriptional activation.PHD finger...	0.04	Archaeplastida
GSVIVT01018979001	No alias	ATP-dependent DNA helicase DDM1 OS=Arabidopsis thaliana	0.07	Archaeplastida
Gb_16888	No alias	ATP-dependent DNA helicase DDM1 OS=Arabidopsis thaliana...	0.03	Archaeplastida
Gb_27153	No alias	chromatin remodeling factor (Snf2)	0.03	Archaeplastida
LOC_Os02g02050.1	No alias	Helicase protein MOM1 OS=Arabidopsis thaliana...	0.02	Archaeplastida
LOC_Os06g01320.1	No alias	Helicase protein MOM1 OS=Arabidopsis thaliana...	0.04	Archaeplastida
LOC_Os07g46590.1	No alias	chromatin remodeling factor (Chd1). component CHR5 of...	0.03	Archaeplastida
LOC_Os09g27060.1	No alias	chromatin remodeling factor (DDM1)	0.05	Archaeplastida
MA_104034g0010	No alias	chromatin remodeling factor (DDM1)	0.04	Archaeplastida
MA_42406g0010	No alias	chromatin remodeling factor (DDM1)	0.02	Archaeplastida
MA_637555g0010	No alias	ATP-dependent helicase BRM OS=Arabidopsis thaliana...	0.02	Archaeplastida
MA_9572741g0010	No alias	no hits & (original description: none)	0.03	Archaeplastida
Mp1g17010.1	No alias	chromatin remodeling factor (Snf2)	0.02	Archaeplastida
Mp2g26680.1	No alias	CHD3-type chromatin-remodeling factor PICKLE...	0.02	Archaeplastida
Pp3c13_14440V3.1	No alias	transcription regulatory protein SNF2, putative	0.02	Archaeplastida
Pp3c13_19680V3.1	No alias	chromatin remodeling 4	0.04	Archaeplastida
Pp3c14_90V3.1	No alias	P-loop containing nucleoside triphosphate hydrolases...	0.03	Archaeplastida
Pp3c17_19520V3.1	No alias	chromatin remodeling 1	0.03	Archaeplastida
Pp3c20_11500V3.1	No alias	chromatin remodeling 5	0.05	Archaeplastida
Pp3c21_10800V3.1	No alias	chromatin remodeling factor CHD3 (PICKLE)	0.04	Archaeplastida
Pp3c27_3890V3.1	No alias	Homeotic gene regulator	0.03	Archaeplastida
Pp3c5_19940V3.1	No alias	chromatin remodeling 5	0.02	Archaeplastida
Smo102612	No alias	Protein CHROMATIN REMODELING 5 OS=Arabidopsis thaliana	0.03	Archaeplastida
Solyc02g062780.4.1	No alias	chromatin remodeling factor (DDM1)	0.05	Archaeplastida
Solyc06g054560.3.1	No alias	chromatin remodeling factor (Iswi)	0.04	Archaeplastida
Zm00001e005517_P002	No alias	chromatin remodeling factor (DDM1)	0.05	Archaeplastida
Zm00001e011541_P001	No alias	chromatin remodeling factor (DDM1)	0.04	Archaeplastida
Zm00001e013442_P001	No alias	chromatin remodeling factor (Snf2)	0.03	Archaeplastida
Zm00001e017643_P001	No alias	chromatin remodeling factor (Iswi)	0.04	Archaeplastida
Zm00001e026331_P001	No alias	chromatin remodeling factor (Iswi)	0.03	Archaeplastida

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0005515	protein binding	None	Extended
MF	GO:0005524	ATP binding	IEA	Interproscan
MF	GO:0008144	drug binding	None	Extended
MF	GO:0017076	purine nucleotide binding	None	Extended
MF	GO:0030554	adenyl nucleotide binding	None	Extended
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032559	adenyl ribonucleotide binding	None	Extended
MF	GO:0035639	purine ribonucleoside triphosphate binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
MF	GO:0042393	histone binding	IEA	Interproscan
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

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Type	GO Term	Name	Evidence	Source
CC	GO:0000796	condensin complex	IEP	Neighborhood
MF	GO:0003678	DNA helicase activity	IEP	Neighborhood
MF	GO:0003774	motor activity	IEP	Neighborhood
MF	GO:0003777	microtubule motor activity	IEP	Neighborhood
MF	GO:0004527	exonuclease activity	IEP	Neighborhood
MF	GO:0004529	exodeoxyribonuclease activity	IEP	Neighborhood
MF	GO:0004536	deoxyribonuclease activity	IEP	Neighborhood
BP	GO:0006260	DNA replication	IEP	Neighborhood
BP	GO:0006323	DNA packaging	IEP	Neighborhood
BP	GO:0006928	movement of cell or subcellular component	IEP	Neighborhood
BP	GO:0007017	microtubule-based process	IEP	Neighborhood
BP	GO:0007018	microtubule-based movement	IEP	Neighborhood
BP	GO:0007076	mitotic chromosome condensation	IEP	Neighborhood
MF	GO:0008017	microtubule binding	IEP	Neighborhood
MF	GO:0008092	cytoskeletal protein binding	IEP	Neighborhood
MF	GO:0008297	single-stranded DNA exodeoxyribonuclease activity	IEP	Neighborhood
MF	GO:0008409	5'-3' exonuclease activity	IEP	Neighborhood
MF	GO:0015631	tubulin binding	IEP	Neighborhood
MF	GO:0016462	pyrophosphatase activity	IEP	Neighborhood
MF	GO:0016796	exonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters	IEP	Neighborhood
MF	GO:0016817	hydrolase activity, acting on acid anhydrides	IEP	Neighborhood
MF	GO:0016818	hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides	IEP	Neighborhood
MF	GO:0016895	exodeoxyribonuclease activity, producing 5'-phosphomonoesters	IEP	Neighborhood
MF	GO:0017111	nucleoside-triphosphatase activity	IEP	Neighborhood
BP	GO:0022402	cell cycle process	IEP	Neighborhood
CC	GO:0030119	AP-type membrane coat adaptor complex	IEP	Neighborhood
CC	GO:0030131	clathrin adaptor complex	IEP	Neighborhood
BP	GO:0030261	chromosome condensation	IEP	Neighborhood
MF	GO:0035312	5'-3' exodeoxyribonuclease activity	IEP	Neighborhood
MF	GO:0043138	3'-5' DNA helicase activity	IEP	Neighborhood
MF	GO:0045145	single-stranded DNA 5'-3' exodeoxyribonuclease activity	IEP	Neighborhood
BP	GO:0051276	chromosome organization	IEP	Neighborhood
BP	GO:0071103	DNA conformation change	IEP	Neighborhood
MF	GO:0140097	catalytic activity, acting on DNA	IEP	Neighborhood
BP	GO:1903047	mitotic cell cycle process	IEP	Neighborhood

InterPro domains	Description	Start	Stop
IPR029295	SnAC	804	880
IPR001650	Helicase_C	611	724
IPR000330	SNF2_N	317	592

External Links

No external refs found!

Solyc01g079690.4.1

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation