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Aliases : evm_27.TU.AmTr_v1.0_scaffold00021.253
Description : RNA processing.organelle machineries.RNA splicing.plastidial RNA splicing.group-II intron splicing.WTF1 basal splicing factor
Gene families : OG0001104 (Archaeplastida) Phylogenetic Tree(s): OG0001104_tree ,
OG_05_0001147 (LandPlants) Phylogenetic Tree(s): OG_05_0001147_tree ,
OG_06_0002903 (SeedPlants) Phylogenetic Tree(s): OG_06_0002903_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | HRR: AMTR_s00021p00241290 | |
| Cluster | HCCA: Cluster_227 |
| Target | Alias | Description | ECC score | Gene Family Method | Actions |
|---|---|---|---|---|---|
| AT4G01037 | WTF1, AtWTF1 | Ubiquitin carboxyl-terminal hydrolase family protein | 0.08 | Archaeplastida | |
| AT5G62990 | emb1692 | Ubiquitin carboxyl-terminal hydrolase family protein | 0.04 | Archaeplastida | |
| Gb_07993 | No alias | WTF1 plastidial RNA basal splicing factor | 0.03 | Archaeplastida | |
| LOC_Os04g24710.1 | No alias | Protein WHATS THIS FACTOR 1 homolog OS=Arabidopsis... | 0.03 | Archaeplastida | |
| LOC_Os05g49610.1 | No alias | WTF1 plastidial RNA basal splicing factor | 0.05 | Archaeplastida | |
| MA_423098g0010 | No alias | WTF1 plastidial RNA basal splicing factor | 0.04 | Archaeplastida | |
| Pp3c18_21300V3.1 | No alias | Ubiquitin carboxyl-terminal hydrolase family protein | 0.05 | Archaeplastida | |
| Smo409264 | No alias | Protein WHATS THIS FACTOR 1 OS=Zea mays | 0.03 | Archaeplastida | |
| Smo422954 | No alias | Protein WHATS THIS FACTOR 1 homolog OS=Oryza sativa... | 0.03 | Archaeplastida |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
No GO annotation available for this sequence |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0000295 | adenine nucleotide transmembrane transporter activity | IEP | Neighborhood |
| MF | GO:0003723 | RNA binding | IEP | Neighborhood |
| MF | GO:0004392 | heme oxygenase (decyclizing) activity | IEP | Neighborhood |
| MF | GO:0005198 | structural molecule activity | IEP | Neighborhood |
| MF | GO:0005346 | purine ribonucleotide transmembrane transporter activity | IEP | Neighborhood |
| MF | GO:0005347 | ATP transmembrane transporter activity | IEP | Neighborhood |
| MF | GO:0005471 | ATP:ADP antiporter activity | IEP | Neighborhood |
| BP | GO:0006778 | porphyrin-containing compound metabolic process | IEP | Neighborhood |
| BP | GO:0006788 | heme oxidation | IEP | Neighborhood |
| MF | GO:0008081 | phosphoric diester hydrolase activity | IEP | Neighborhood |
| MF | GO:0008509 | anion transmembrane transporter activity | IEP | Neighborhood |
| MF | GO:0008514 | organic anion transmembrane transporter activity | IEP | Neighborhood |
| CC | GO:0009507 | chloroplast | IEP | Neighborhood |
| CC | GO:0009536 | plastid | IEP | Neighborhood |
| MF | GO:0009916 | alternative oxidase activity | IEP | Neighborhood |
| MF | GO:0015215 | nucleotide transmembrane transporter activity | IEP | Neighborhood |
| MF | GO:0015216 | purine nucleotide transmembrane transporter activity | IEP | Neighborhood |
| MF | GO:0015217 | ADP transmembrane transporter activity | IEP | Neighborhood |
| MF | GO:0015301 | anion:anion antiporter activity | IEP | Neighborhood |
| MF | GO:0015605 | organophosphate ester transmembrane transporter activity | IEP | Neighborhood |
| MF | GO:0015932 | nucleobase-containing compound transmembrane transporter activity | IEP | Neighborhood |
| BP | GO:0016226 | iron-sulfur cluster assembly | IEP | Neighborhood |
| MF | GO:0016679 | oxidoreductase activity, acting on diphenols and related substances as donors | IEP | Neighborhood |
| MF | GO:0016682 | oxidoreductase activity, acting on diphenols and related substances as donors, oxygen as acceptor | IEP | Neighborhood |
| MF | GO:0019843 | rRNA binding | IEP | Neighborhood |
| BP | GO:0031163 | metallo-sulfur cluster assembly | IEP | Neighborhood |
| BP | GO:0033013 | tetrapyrrole metabolic process | IEP | Neighborhood |
| BP | GO:0042168 | heme metabolic process | IEP | Neighborhood |
| BP | GO:0042440 | pigment metabolic process | IEP | Neighborhood |
| CC | GO:0043226 | organelle | IEP | Neighborhood |
| CC | GO:0043229 | intracellular organelle | IEP | Neighborhood |
| CC | GO:0044444 | cytoplasmic part | IEP | Neighborhood |
| MF | GO:0046422 | violaxanthin de-epoxidase activity | IEP | Neighborhood |
| BP | GO:0051186 | cofactor metabolic process | IEP | Neighborhood |
| MF | GO:0099516 | ion antiporter activity | IEP | Neighborhood |
| MF | GO:1901505 | carbohydrate derivative transmembrane transporter activity | IEP | Neighborhood |
| InterPro domains | Description | Start | Stop |
|---|---|---|---|
| IPR021099 | PORR_domain | 87 | 420 |
| No external refs found! |