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  5. Solyc01g080920.3.1

Solyc01g080920.3.1


Description : No annotation


Gene families : OG0000112 (Archaeplastida) Phylogenetic Tree(s): OG0000112_tree ,
OG_05_0000097 (LandPlants) Phylogenetic Tree(s): OG_05_0000097_tree ,
OG_06_0000440 (SeedPlants) Phylogenetic Tree(s): OG_06_0000440_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc01g080920.3.1
Cluster HCCA: Cluster_11

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00030p00130440 evm_27.TU.AmTr_v1... Protein degradation.peptide tagging.Ubiquitin... 0.03 Archaeplastida
AMTR_s00030p00159240 evm_27.TU.AmTr_v1... E3 ubiquitin-protein ligase PUB23 OS=Arabidopsis thaliana 0.07 Archaeplastida
AMTR_s00030p00161650 evm_27.TU.AmTr_v1... E3 ubiquitin-protein ligase PUB23 OS=Arabidopsis thaliana 0.05 Archaeplastida
AMTR_s00043p00215340 evm_27.TU.AmTr_v1... U-box domain-containing protein 8 OS=Arabidopsis thaliana 0.02 Archaeplastida
AMTR_s00069p00038840 evm_27.TU.AmTr_v1... E3 ubiquitin-protein ligase PUB22 OS=Arabidopsis thaliana 0.06 Archaeplastida
AMTR_s00138p00053700 evm_27.TU.AmTr_v1... U-box domain-containing protein 21 OS=Arabidopsis thaliana 0.04 Archaeplastida
AT3G02840 No alias ARM repeat superfamily protein 0.04 Archaeplastida
AT3G11840 PUB24 plant U-box 24 0.07 Archaeplastida
AT3G19380 PUB25 plant U-box 25 0.03 Archaeplastida
AT3G52450 PUB22 plant U-box 22 0.03 Archaeplastida
GSVIVT01026542001 No alias U-box domain-containing protein 27 OS=Arabidopsis thaliana 0.03 Archaeplastida
GSVIVT01026764001 No alias E3 ubiquitin-protein ligase PUB22 OS=Arabidopsis thaliana 0.04 Archaeplastida
GSVIVT01026769001 No alias E3 ubiquitin-protein ligase PUB22 OS=Arabidopsis thaliana 0.02 Archaeplastida
Gb_02629 No alias U-box domain-containing protein 26 OS=Arabidopsis... 0.03 Archaeplastida
Gb_16227 No alias U-box domain-containing protein 21 OS=Arabidopsis... 0.02 Archaeplastida
Gb_19502 No alias U-box domain-containing protein 25 OS=Arabidopsis... 0.05 Archaeplastida
Gb_27794 No alias U-box domain-containing protein 21 OS=Arabidopsis... 0.03 Archaeplastida
Gb_29851 No alias U-box domain-containing protein 21 OS=Arabidopsis... 0.03 Archaeplastida
LOC_Os02g46500.1 No alias E3 ubiquitin-protein ligase PUB23 OS=Arabidopsis... 0.01 Archaeplastida
LOC_Os02g50460.1 No alias U-box domain-containing protein 20 OS=Arabidopsis... 0.02 Archaeplastida
LOC_Os04g34030.1 No alias E3 ubiquitin-protein ligase PUB23 OS=Arabidopsis... 0.05 Archaeplastida
LOC_Os04g34140.1 No alias E3 ubiquitin ligase (PUB) 0.02 Archaeplastida
LOC_Os04g49970.1 No alias E3 ubiquitin-protein ligase PUB23 OS=Arabidopsis... 0.04 Archaeplastida
LOC_Os04g58920.1 No alias E3 ubiquitin-protein ligase PUB23 OS=Arabidopsis... 0.06 Archaeplastida
LOC_Os06g13870.1 No alias U-box domain-containing protein 21 OS=Arabidopsis... 0.03 Archaeplastida
MA_10430196g0010 No alias E3 ubiquitin-protein ligase PUB23 OS=Arabidopsis... 0.04 Archaeplastida
MA_10433846g0010 No alias E3 ubiquitin-protein ligase PUB23 OS=Arabidopsis... 0.03 Archaeplastida
MA_126399g0010 No alias U-box domain-containing protein 25 OS=Arabidopsis... 0.03 Archaeplastida
MA_209202g0010 No alias U-box domain-containing protein 25 OS=Arabidopsis... 0.02 Archaeplastida
MA_311559g0010 No alias E3 ubiquitin-protein ligase PUB22 OS=Arabidopsis... 0.03 Archaeplastida
MA_415344g0010 No alias E3 ubiquitin-protein ligase PUB23 OS=Arabidopsis... 0.02 Archaeplastida
MA_52661g0010 No alias U-box domain-containing protein 21 OS=Arabidopsis... 0.02 Archaeplastida
MA_58844g0020 No alias E3 ubiquitin-protein ligase PUB23 OS=Arabidopsis... 0.03 Archaeplastida
MA_8837995g0010 No alias U-box domain-containing protein 26 OS=Arabidopsis... 0.02 Archaeplastida
MA_9494855g0010 No alias U-box domain-containing protein 25 OS=Arabidopsis... 0.03 Archaeplastida
MA_95662g0020 No alias U-box domain-containing protein 27 OS=Arabidopsis... 0.02 Archaeplastida
Mp3g22740.1 No alias E3 ubiquitin-protein ligase PUB23 OS=Arabidopsis... 0.02 Archaeplastida
Mp7g11000.1 No alias U-box domain-containing protein 25 OS=Arabidopsis... 0.03 Archaeplastida
Pp3c10_20630V3.1 No alias plant U-box 22 0.02 Archaeplastida
Pp3c24_16470V3.1 No alias RING/U-box superfamily protein with ARM repeat domain 0.02 Archaeplastida
Pp3c4_20710V3.1 No alias plant U-box 25 0.03 Archaeplastida
Pp3c4_6500V3.1 No alias plant U-box 22 0.03 Archaeplastida
Solyc01g005160.4.1 No alias U-box domain-containing protein 21 OS=Arabidopsis... 0.03 Archaeplastida
Solyc01g007010.2.1 No alias E3 ubiquitin-protein ligase PUB23 OS=Arabidopsis... 0.04 Archaeplastida
Solyc01g007020.4.1 No alias E3 ubiquitin-protein ligase PUB23 OS=Arabidopsis... 0.03 Archaeplastida
Solyc01g007040.4.1 No alias E3 ubiquitin-protein ligase PUB22 OS=Arabidopsis... 0.04 Archaeplastida
Solyc01g007050.3.1 No alias E3 ubiquitin-protein ligase PUB24 OS=Arabidopsis... 0.07 Archaeplastida
Solyc01g009320.2.1 No alias E3 ubiquitin-protein ligase PUB23 OS=Arabidopsis... 0.02 Archaeplastida
Solyc01g009330.1.1 No alias E3 ubiquitin-protein ligase PUB23 OS=Arabidopsis... 0.04 Archaeplastida
Solyc01g107980.3.1 No alias U-box domain-containing protein 25 OS=Arabidopsis... 0.05 Archaeplastida
Solyc04g008100.3.1 No alias U-box domain-containing protein 21 OS=Arabidopsis... 0.03 Archaeplastida
Solyc06g074140.1.1 No alias E3 ubiquitin-protein ligase PUB24 OS=Arabidopsis... 0.05 Archaeplastida
Solyc11g006030.1.1 No alias U-box domain-containing protein 21 OS=Arabidopsis... 0.06 Archaeplastida
Solyc11g068940.1.1 No alias E3 ubiquitin-protein ligase PUB24 OS=Arabidopsis... 0.06 Archaeplastida
Zm00001e000999_P001 No alias U-box domain-containing protein 20 OS=Arabidopsis... 0.02 Archaeplastida
Zm00001e006484_P001 No alias E3 ubiquitin-protein ligase PUB23 OS=Arabidopsis... 0.03 Archaeplastida
Zm00001e007108_P001 No alias No annotation 0.04 Archaeplastida
Zm00001e007109_P001 No alias E3 ubiquitin-protein ligase PUB23 OS=Arabidopsis... 0.07 Archaeplastida
Zm00001e015763_P001 No alias U-box domain-containing protein 21 OS=Arabidopsis... 0.05 Archaeplastida
Zm00001e022698_P001 No alias U-box domain-containing protein 25 OS=Arabidopsis... 0.05 Archaeplastida
Zm00001e039417_P001 No alias E3 ubiquitin-protein ligase PUB23 OS=Arabidopsis... 0.03 Archaeplastida
Zm00001e040854_P001 No alias U-box domain-containing protein 29 OS=Arabidopsis... 0.03 Archaeplastida
Zm00001e041397_P001 No alias E3 ubiquitin-protein ligase PUB23 OS=Arabidopsis... 0.04 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
BP GO:0000041 transition metal ion transport IEP Neighborhood
MF GO:0000166 nucleotide binding IEP Neighborhood
MF GO:0001871 pattern binding IEP Neighborhood
MF GO:0003674 molecular_function IEP Neighborhood
MF GO:0003824 catalytic activity IEP Neighborhood
MF GO:0004175 endopeptidase activity IEP Neighborhood
MF GO:0004252 serine-type endopeptidase activity IEP Neighborhood
MF GO:0004356 glutamate-ammonia ligase activity IEP Neighborhood
MF GO:0004611 phosphoenolpyruvate carboxykinase activity IEP Neighborhood
MF GO:0004672 protein kinase activity IEP Neighborhood
MF GO:0005215 transporter activity IEP Neighborhood
MF GO:0005375 copper ion transmembrane transporter activity IEP Neighborhood
MF GO:0005488 binding IEP Neighborhood
MF GO:0005509 calcium ion binding IEP Neighborhood
BP GO:0006099 tricarboxylic acid cycle IEP Neighborhood
BP GO:0006101 citrate metabolic process IEP Neighborhood
BP GO:0006464 cellular protein modification process IEP Neighborhood
BP GO:0006468 protein phosphorylation IEP Neighborhood
BP GO:0006541 glutamine metabolic process IEP Neighborhood
BP GO:0006542 glutamine biosynthetic process IEP Neighborhood
BP GO:0006793 phosphorus metabolic process IEP Neighborhood
BP GO:0006796 phosphate-containing compound metabolic process IEP Neighborhood
BP GO:0006807 nitrogen compound metabolic process IEP Neighborhood
BP GO:0006810 transport IEP Neighborhood
BP GO:0006811 ion transport IEP Neighborhood
BP GO:0006812 cation transport IEP Neighborhood
BP GO:0006825 copper ion transport IEP Neighborhood
BP GO:0008037 cell recognition IEP Neighborhood
MF GO:0008131 primary amine oxidase activity IEP Neighborhood
BP GO:0008150 biological_process IEP Neighborhood
BP GO:0008152 metabolic process IEP Neighborhood
MF GO:0008236 serine-type peptidase activity IEP Neighborhood
BP GO:0008272 sulfate transport IEP Neighborhood
MF GO:0008324 cation transmembrane transporter activity IEP Neighborhood
MF GO:0008964 phosphoenolpyruvate carboxylase activity IEP Neighborhood
BP GO:0009064 glutamine family amino acid metabolic process IEP Neighborhood
BP GO:0009084 glutamine family amino acid biosynthetic process IEP Neighborhood
MF GO:0010181 FMN binding IEP Neighborhood
MF GO:0015075 ion transmembrane transporter activity IEP Neighborhood
MF GO:0015116 sulfate transmembrane transporter activity IEP Neighborhood
MF GO:0015267 channel activity IEP Neighborhood
MF GO:0015276 ligand-gated ion channel activity IEP Neighborhood
MF GO:0015318 inorganic molecular entity transmembrane transporter activity IEP Neighborhood
BP GO:0015977 carbon fixation IEP Neighborhood
CC GO:0016020 membrane IEP Neighborhood
MF GO:0016211 ammonia ligase activity IEP Neighborhood
MF GO:0016301 kinase activity IEP Neighborhood
BP GO:0016310 phosphorylation IEP Neighborhood
MF GO:0016638 oxidoreductase activity, acting on the CH-NH2 group of donors IEP Neighborhood
MF GO:0016641 oxidoreductase activity, acting on the CH-NH2 group of donors, oxygen as acceptor IEP Neighborhood
MF GO:0016740 transferase activity IEP Neighborhood
MF GO:0016772 transferase activity, transferring phosphorus-containing groups IEP Neighborhood
MF GO:0016773 phosphotransferase activity, alcohol group as acceptor IEP Neighborhood
MF GO:0016880 acid-ammonia (or amide) ligase activity IEP Neighborhood
BP GO:0016999 antibiotic metabolic process IEP Neighborhood
MF GO:0017171 serine hydrolase activity IEP Neighborhood
BP GO:0019538 protein metabolic process IEP Neighborhood
BP GO:0022414 reproductive process IEP Neighborhood
MF GO:0022803 passive transmembrane transporter activity IEP Neighborhood
MF GO:0022834 ligand-gated channel activity IEP Neighborhood
MF GO:0022857 transmembrane transporter activity IEP Neighborhood
MF GO:0022890 inorganic cation transmembrane transporter activity IEP Neighborhood
BP GO:0030001 metal ion transport IEP Neighborhood
MF GO:0030246 carbohydrate binding IEP Neighborhood
MF GO:0030247 polysaccharide binding IEP Neighborhood
BP GO:0035434 copper ion transmembrane transport IEP Neighborhood
BP GO:0036211 protein modification process IEP Neighborhood
MF GO:0043167 ion binding IEP Neighborhood
MF GO:0043169 cation binding IEP Neighborhood
BP GO:0043170 macromolecule metabolic process IEP Neighborhood
BP GO:0043412 macromolecule modification IEP Neighborhood
MF GO:0043531 ADP binding IEP Neighborhood
BP GO:0044238 primary metabolic process IEP Neighborhood
BP GO:0044260 cellular macromolecule metabolic process IEP Neighborhood
BP GO:0044267 cellular protein metabolic process IEP Neighborhood
MF GO:0045735 nutrient reservoir activity IEP Neighborhood
MF GO:0046872 metal ion binding IEP Neighborhood
MF GO:0046873 metal ion transmembrane transporter activity IEP Neighborhood
BP GO:0048544 recognition of pollen IEP Neighborhood
BP GO:0051179 localization IEP Neighborhood
BP GO:0051234 establishment of localization IEP Neighborhood
BP GO:0055085 transmembrane transport IEP Neighborhood
BP GO:0071704 organic substance metabolic process IEP Neighborhood
BP GO:0072348 sulfur compound transport IEP Neighborhood
BP GO:0072350 tricarboxylic acid metabolic process IEP Neighborhood
MF GO:0140096 catalytic activity, acting on a protein IEP Neighborhood
MF GO:1901265 nucleoside phosphate binding IEP Neighborhood
BP GO:1901564 organonitrogen compound metabolic process IEP Neighborhood
MF GO:1901682 sulfur compound transmembrane transporter activity IEP Neighborhood

No InterPro domains available for this sequence

No external refs found!