Solyc01g081020.1.1

Description : RNA editing factor (OTP80)

Gene families : OG0000000 (Archaeplastida) Phylogenetic Tree(s): No tree available for this family ,
OG_05_0000000 (LandPlants) Phylogenetic Tree(s): OG_05_0000000_tree ,
OG_06_0000000 (SeedPlants) Phylogenetic Tree(s): OG_06_0000000_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Solyc01g081020.1.1
Cluster	HCCA: Cluster_211

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00006p00257020	evm_27.TU.AmTr_v1...	External stimuli response.light.UV-A/blue...	0.02	Archaeplastida
AMTR_s00022p00156450	evm_27.TU.AmTr_v1...	Pentatricopeptide repeat-containing protein At2g03880,...	0.04	Archaeplastida
AMTR_s00032p00177680	evm_27.TU.AmTr_v1...	Putative pentatricopeptide repeat-containing protein...	0.02	Archaeplastida
AMTR_s00032p00219990	No alias	Pentatricopeptide repeat-containing protein At3g57430,...	0.02	Archaeplastida
AMTR_s00040p00098330	evm_27.TU.AmTr_v1...	Pentatricopeptide repeat-containing protein At3g46790,...	0.02	Archaeplastida
AMTR_s00065p00031420	evm_27.TU.AmTr_v1...	Pentatricopeptide repeat-containing protein At2g33680...	0.02	Archaeplastida
AMTR_s00068p00031610	evm_27.TU.AmTr_v1...	Putative pentatricopeptide repeat-containing protein...	0.02	Archaeplastida
AMTR_s00068p00072270	evm_27.TU.AmTr_v1...	Pentatricopeptide repeat-containing protein At2g27610...	0.02	Archaeplastida
AMTR_s00071p00184210	evm_27.TU.AmTr_v1...	Pentatricopeptide repeat-containing protein At4g13650...	0.02	Archaeplastida
AMTR_s00122p00115170	No alias	RNA processing.organelle machineries.RNA...	0.02	Archaeplastida
AT3G12770	MEF22	mitochondrial editing factor 22	0.04	Archaeplastida
AT3G18970	MEF20	mitochondrial editing factor 20	0.03	Archaeplastida
AT3G22150	No alias	Tetratricopeptide repeat (TPR)-like superfamily protein	0.03	Archaeplastida
AT3G29230	No alias	Tetratricopeptide repeat (TPR)-like superfamily protein	0.03	Archaeplastida
AT4G13650	No alias	Pentatricopeptide repeat (PPR) superfamily protein	0.03	Archaeplastida
Cpa\|evm.model.tig00021312.67	No alias	No description available	0.01	Archaeplastida
GSVIVT01000086001	No alias	Pentatricopeptide repeat-containing protein At3g14330...	0.08	Archaeplastida
GSVIVT01003804001	No alias	Pentatricopeptide repeat-containing protein At5g16860...	0.04	Archaeplastida
GSVIVT01007645001	No alias	Pentatricopeptide repeat-containing protein ELI1,...	0.04	Archaeplastida
GSVIVT01009227001	No alias	Pentatricopeptide repeat-containing protein At2g22070...	0.06	Archaeplastida
GSVIVT01009407001	No alias	Pentatricopeptide repeat-containing protein At2g27610...	0.07	Archaeplastida
GSVIVT01009789001	No alias	Pentatricopeptide repeat-containing protein At1g19720...	0.03	Archaeplastida
GSVIVT01011479001	No alias	Pentatricopeptide repeat-containing protein At3g29230...	0.04	Archaeplastida
GSVIVT01012201001	No alias	Pentatricopeptide repeat-containing protein At1g08070,...	0.14	Archaeplastida
GSVIVT01020091001	No alias	RNA processing.organelle machineries.RNA...	0.03	Archaeplastida
GSVIVT01024912001	No alias	Pentatricopeptide repeat-containing protein At4g13650...	0.04	Archaeplastida
GSVIVT01026181001	No alias	Pentatricopeptide repeat-containing protein At5g08305...	0.03	Archaeplastida
GSVIVT01030080001	No alias	RNA processing.organelle machineries.RNA...	0.03	Archaeplastida
GSVIVT01031733001	No alias	Pentatricopeptide repeat-containing protein At4g33990...	0.03	Archaeplastida
GSVIVT01032721001	No alias	Pentatricopeptide repeat-containing protein At3g53360,...	0.04	Archaeplastida
GSVIVT01033304001	No alias	Pentatricopeptide repeat-containing protein At2g02980,...	0.05	Archaeplastida
GSVIVT01035491001	No alias	Pentatricopeptide repeat-containing protein At4g33170...	0.07	Archaeplastida
GSVIVT01036207001	No alias	Pentatricopeptide repeat-containing protein At5g66520...	0.07	Archaeplastida
Gb_08518	No alias	Pentatricopeptide repeat-containing protein At4g33170...	0.03	Archaeplastida
Gb_12556	No alias	Pentatricopeptide repeat-containing protein At1g20230...	0.03	Archaeplastida
Gb_25129	No alias	RNA editing factor (ECD1)	0.03	Archaeplastida
Gb_26260	No alias	RNA editing factor (MEF7)	0.05	Archaeplastida
Gb_27880	No alias	RNA editing factor (ECB2/VAC1)	0.03	Archaeplastida
Gb_31699	No alias	Pentatricopeptide repeat-containing protein At1g19720...	0.03	Archaeplastida
Gb_36178	No alias	Pentatricopeptide repeat-containing protein At2g13600...	0.03	Archaeplastida
Gb_38750	No alias	RNA editing factor (OTP82)	0.03	Archaeplastida
Gb_39702	No alias	Pentatricopeptide repeat-containing protein DOT4,...	0.02	Archaeplastida
LOC_Os01g10800.1	No alias	Pentatricopeptide repeat-containing protein DOT4,...	0.02	Archaeplastida
LOC_Os02g50280.1	No alias	Pentatricopeptide repeat-containing protein At1g11290,...	0.03	Archaeplastida
LOC_Os03g04390.1	No alias	Pentatricopeptide repeat-containing protein At4g35130,...	0.03	Archaeplastida
LOC_Os10g34720.1	No alias	Putative pentatricopeptide repeat-containing protein...	0.06	Archaeplastida
LOC_Os12g01850.1	No alias	Putative pentatricopeptide repeat-containing protein...	0.02	Archaeplastida
MA_10429069g0010	No alias	Pentatricopeptide repeat-containing protein DOT4,...	0.04	Archaeplastida
MA_135075g0020	No alias	Pentatricopeptide repeat-containing protein At3g57430,...	0.04	Archaeplastida
MA_16823g0010	No alias	RNA editing factor (MEF19)	0.04	Archaeplastida
MA_17949g0010	No alias	Pentatricopeptide repeat-containing protein At3g57430,...	0.02	Archaeplastida
MA_20599g0020	No alias	Pentatricopeptide repeat-containing protein At5g16860...	0.02	Archaeplastida
MA_30949g0010	No alias	Pentatricopeptide repeat-containing protein At3g57430,...	0.02	Archaeplastida
MA_50789g0010	No alias	Pentatricopeptide repeat-containing protein At2g13600...	0.02	Archaeplastida
MA_615077g0010	No alias	Pentatricopeptide repeat-containing protein At3g12770...	0.05	Archaeplastida
MA_742g0010	No alias	Putative pentatricopeptide repeat-containing protein...	0.03	Archaeplastida
MA_75133g0010	No alias	Pentatricopeptide repeat-containing protein At1g11290,...	0.03	Archaeplastida
MA_81514g0010	No alias	Pentatricopeptide repeat-containing protein At1g11290,...	0.04	Archaeplastida
MA_86628g0010	No alias	Pentatricopeptide repeat-containing protein At1g11290,...	0.04	Archaeplastida
MA_8678g0010	No alias	Pentatricopeptide repeat-containing protein At2g27610...	0.03	Archaeplastida
MA_9258g0010	No alias	Pentatricopeptide repeat-containing protein At4g13650...	0.04	Archaeplastida
MA_9415113g0010	No alias	Pentatricopeptide repeat-containing protein At2g27610...	0.03	Archaeplastida
MA_94165g0010	No alias	Pentatricopeptide repeat-containing protein At1g11290,...	0.03	Archaeplastida
MA_9526611g0020	No alias	Pentatricopeptide repeat-containing protein At3g57430,...	0.02	Archaeplastida
Pp3c11_7720V3.1	No alias	Pentatricopeptide repeat (PPR) superfamily protein	0.02	Archaeplastida
Smo47998	No alias	Pentatricopeptide repeat-containing protein At2g34400...	0.02	Archaeplastida
Smo98955	No alias	Pentatricopeptide repeat-containing protein At2g13600...	0.02	Archaeplastida
Zm00001e000301_P001	No alias	Pentatricopeptide repeat-containing protein At4g35130,...	0.03	Archaeplastida
Zm00001e002552_P001	No alias	RNA editing factor (SEL1/PDM1)	0.03	Archaeplastida
Zm00001e003605_P001	No alias	Pentatricopeptide repeat-containing protein DOT4,...	0.04	Archaeplastida
Zm00001e004121_P001	No alias	no hits & (original description: none)	0.03	Archaeplastida
Zm00001e005067_P001	No alias	Pentatricopeptide repeat-containing protein At2g42920,...	0.02	Archaeplastida
Zm00001e007042_P001	No alias	RNA editing factor (AEF1)	0.05	Archaeplastida
Zm00001e011467_P004	No alias	Pentatricopeptide repeat-containing protein At5g03800...	0.03	Archaeplastida
Zm00001e013713_P001	No alias	Pentatricopeptide repeat-containing protein At4g20770...	0.02	Archaeplastida
Zm00001e015727_P001	No alias	Pentatricopeptide repeat-containing protein At5g66520...	0.03	Archaeplastida
Zm00001e020567_P001	No alias	RNA editing factor (MEF7)	0.02	Archaeplastida
Zm00001e031351_P001	No alias	RNA editing factor (ECD1)	0.03	Archaeplastida
Zm00001e032499_P001	No alias	no hits & (original description: none)	0.02	Archaeplastida
Zm00001e034445_P001	No alias	Pentatricopeptide repeat-containing protein At5g48910...	0.03	Archaeplastida

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0008270	zinc ion binding	IEA	Interproscan
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043169	cation binding	None	Extended
MF	GO:0046872	metal ion binding	None	Extended
MF	GO:0046914	transition metal ion binding	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0003690	double-stranded DNA binding	IEP	Neighborhood
MF	GO:0003747	translation release factor activity	IEP	Neighborhood
MF	GO:0005524	ATP binding	IEP	Neighborhood
BP	GO:0006415	translational termination	IEP	Neighborhood
MF	GO:0008079	translation termination factor activity	IEP	Neighborhood
MF	GO:0008135	translation factor activity, RNA binding	IEP	Neighborhood
MF	GO:0016887	ATPase activity	IEP	Neighborhood
BP	GO:0022411	cellular component disassembly	IEP	Neighborhood
BP	GO:0032984	protein-containing complex disassembly	IEP	Neighborhood
BP	GO:0043624	cellular protein complex disassembly	IEP	Neighborhood
BP	GO:0043933	protein-containing complex subunit organization	IEP	Neighborhood
MF	GO:0097159	organic cyclic compound binding	IEP	Neighborhood
MF	GO:1901363	heterocyclic compound binding	IEP	Neighborhood

InterPro domains	Description	Start	Stop
IPR002885	Pentatricopeptide_repeat	160	185
IPR002885	Pentatricopeptide_repeat	391	416
IPR002885	Pentatricopeptide_repeat	317	365
IPR002885	Pentatricopeptide_repeat	217	264
IPR002885	Pentatricopeptide_repeat	88	135
IPR032867	DYW_dom	490	613

External Links

No external refs found!

Solyc01g081020.1.1

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation