1. Home
  2. Species
  3. Solanum lycopersicum
  4. Sequence
  5. Solyc01g081040.4.1

Solyc01g081040.4.1


Description : RING-H2-class E3 ligase


Gene families : OG0000004 (Archaeplastida) Phylogenetic Tree(s): No tree available for this family ,
OG_05_0000003 (LandPlants) Phylogenetic Tree(s): OG_05_0000003_tree ,
OG_06_0001298 (SeedPlants) Phylogenetic Tree(s): OG_06_0001298_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc01g081040.4.1
Cluster HCCA: Cluster_27

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00002p00198340 evm_27.TU.AmTr_v1... Protein degradation.peptide tagging.Ubiquitin... 0.03 Archaeplastida
AMTR_s00006p00267830 evm_27.TU.AmTr_v1... Nutrient uptake.iron uptake.regulation.IDF1 IRT1-ubiquitin ligase 0.03 Archaeplastida
AMTR_s00008p00200880 evm_27.TU.AmTr_v1... Protein degradation.peptide tagging.Ubiquitin... 0.03 Archaeplastida
AMTR_s00044p00112360 evm_27.TU.AmTr_v1... Protein degradation.peptide tagging.Ubiquitin... 0.03 Archaeplastida
AMTR_s00077p00070720 evm_27.TU.AmTr_v1... Protein degradation.peptide tagging.Ubiquitin... 0.03 Archaeplastida
AT1G76410 ATL8 RING/U-box superfamily protein 0.03 Archaeplastida
AT2G17450 RHA3A RING-H2 finger A3A 0.04 Archaeplastida
AT3G43430 No alias RING/U-box superfamily protein 0.02 Archaeplastida
AT3G62690 ATL5 AtL5 0.04 Archaeplastida
AT4G00305 No alias RING/U-box superfamily protein 0.03 Archaeplastida
AT4G35840 No alias RING/U-box superfamily protein 0.04 Archaeplastida
AT5G05280 No alias RING/U-box superfamily protein 0.04 Archaeplastida
AT5G17600 No alias RING/U-box superfamily protein 0.03 Archaeplastida
AT5G41400 No alias RING/U-box superfamily protein 0.05 Archaeplastida
GSVIVT01012015001 No alias Protein degradation.peptide tagging.Ubiquitin... 0.03 Archaeplastida
GSVIVT01012022001 No alias Protein degradation.peptide tagging.Ubiquitin... 0.02 Archaeplastida
GSVIVT01019592001 No alias Protein degradation.peptide tagging.Ubiquitin... 0.03 Archaeplastida
GSVIVT01023776001 No alias Protein degradation.peptide tagging.Ubiquitin... 0.04 Archaeplastida
GSVIVT01028038001 No alias Protein degradation.peptide tagging.Ubiquitin... 0.04 Archaeplastida
GSVIVT01028306001 No alias Protein degradation.peptide tagging.Ubiquitin... 0.04 Archaeplastida
GSVIVT01030125001 No alias Protein degradation.peptide tagging.Ubiquitin... 0.03 Archaeplastida
GSVIVT01032684001 No alias Protein degradation.peptide tagging.Ubiquitin... 0.03 Archaeplastida
Gb_05004 No alias Probable E3 ubiquitin-protein ligase RHA1A... 0.03 Archaeplastida
Gb_05005 No alias E3 ubiquitin-protein ligase RHA1B OS=Arabidopsis... 0.03 Archaeplastida
Gb_36232 No alias IDF1 iron uptake IRT1-ubiquitin ligase 0.02 Archaeplastida
LOC_Os01g11480.1 No alias RING-H2-class E3 ligase 0.03 Archaeplastida
LOC_Os01g11520.1 No alias RING-H2-class E3 ligase 0.03 Archaeplastida
LOC_Os01g20930.1 No alias no hits & (original description: none) 0.06 Archaeplastida
LOC_Os04g49700.1 No alias E3 ubiquitin-protein ligase ATL4 OS=Arabidopsis thaliana... 0.03 Archaeplastida
LOC_Os06g50370.1 No alias NEP1-interacting protein 1 OS=Arabidopsis thaliana... 0.03 Archaeplastida
LOC_Os08g06090.1 No alias no hits & (original description: none) 0.03 Archaeplastida
LOC_Os08g38460.1 No alias ubiquitin protein ligase (XERICO) 0.06 Archaeplastida
LOC_Os08g43670.1 No alias NEP1-interacting protein 2 OS=Arabidopsis thaliana... 0.02 Archaeplastida
LOC_Os09g30160.1 No alias ubiquitin protein ligase (XERICO) 0.03 Archaeplastida
LOC_Os12g24490.1 No alias RING-H2-class E3 ligase 0.02 Archaeplastida
MA_125507g0010 No alias RING-H2-class E3 ligase 0.03 Archaeplastida
MA_201391g0010 No alias Probable E3 ubiquitin-protein ligase RHA1A... 0.03 Archaeplastida
MA_373963g0010 No alias no hits & (original description: none) 0.04 Archaeplastida
MA_391590g0010 No alias no hits & (original description: none) 0.03 Archaeplastida
MA_46635g0010 No alias no hits & (original description: none) 0.03 Archaeplastida
MA_51630g0010 No alias RING-H2-class E3 ligase 0.04 Archaeplastida
MA_611616g0010 No alias RING-H2-class E3 ligase 0.04 Archaeplastida
Mp3g00390.1 No alias RING-H2-class E3 ligase 0.02 Archaeplastida
Mp7g06030.1 No alias RING-H2-class E3 ligase 0.02 Archaeplastida
Pp3c1_20780V3.1 No alias RING/U-box superfamily protein 0.03 Archaeplastida
Pp3c26_11650V3.1 No alias TOXICOS EN LEVADURA 2 0.02 Archaeplastida
Pp3c6_19030V3.1 No alias RING/U-box superfamily protein 0.02 Archaeplastida
Smo109459 No alias Protein degradation.peptide tagging.Ubiquitin... 0.04 Archaeplastida
Smo8844 No alias Protein degradation.peptide tagging.Ubiquitin... 0.02 Archaeplastida
Solyc01g105610.1.1 No alias RING-H2-class E3 ligase 0.05 Archaeplastida
Solyc09g066300.3.1 No alias RING-H2-class E3 ligase 0.03 Archaeplastida
Solyc12g094690.1.1 No alias RING-H2 finger protein ATL8 OS=Arabidopsis thaliana... 0.04 Archaeplastida
Zm00001e007103_P001 No alias RING-H2-class E3 ligase 0.02 Archaeplastida
Zm00001e008560_P001 No alias no hits & (original description: none) 0.02 Archaeplastida
Zm00001e017960_P001 No alias no hits & (original description: none) 0.04 Archaeplastida
Zm00001e020958_P001 No alias no hits & (original description: none) 0.03 Archaeplastida
Zm00001e023515_P001 No alias RING-H2-class E3 ligase 0.03 Archaeplastida
Zm00001e023585_P001 No alias RING-H2-class E3 ligase 0.03 Archaeplastida
Zm00001e026906_P001 No alias no hits & (original description: none) 0.02 Archaeplastida
Zm00001e030930_P001 No alias no hits & (original description: none) 0.02 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
Toggle parental
Type GO Term Name Evidence Source
BP GO:0000160 phosphorelay signal transduction system IEP Neighborhood
MF GO:0000166 nucleotide binding IEP Neighborhood
MF GO:0003674 molecular_function IEP Neighborhood
MF GO:0003824 catalytic activity IEP Neighborhood
MF GO:0004180 carboxypeptidase activity IEP Neighborhood
MF GO:0004185 serine-type carboxypeptidase activity IEP Neighborhood
MF GO:0004519 endonuclease activity IEP Neighborhood
MF GO:0004521 endoribonuclease activity IEP Neighborhood
MF GO:0004540 ribonuclease activity IEP Neighborhood
MF GO:0004650 polygalacturonase activity IEP Neighborhood
MF GO:0005215 transporter activity IEP Neighborhood
MF GO:0005488 binding IEP Neighborhood
BP GO:0006810 transport IEP Neighborhood
MF GO:0008144 drug binding IEP Neighborhood
BP GO:0008150 biological_process IEP Neighborhood
MF GO:0008238 exopeptidase activity IEP Neighborhood
MF GO:0015399 primary active transmembrane transporter activity IEP Neighborhood
MF GO:0015405 P-P-bond-hydrolysis-driven transmembrane transporter activity IEP Neighborhood
MF GO:0016462 pyrophosphatase activity IEP Neighborhood
MF GO:0016627 oxidoreductase activity, acting on the CH-CH group of donors IEP Neighborhood
MF GO:0016787 hydrolase activity IEP Neighborhood
MF GO:0016817 hydrolase activity, acting on acid anhydrides IEP Neighborhood
MF GO:0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides IEP Neighborhood
MF GO:0016830 carbon-carbon lyase activity IEP Neighborhood
MF GO:0016831 carboxy-lyase activity IEP Neighborhood
MF GO:0016887 ATPase activity IEP Neighborhood
MF GO:0017111 nucleoside-triphosphatase activity IEP Neighborhood
MF GO:0022804 active transmembrane transporter activity IEP Neighborhood
MF GO:0022857 transmembrane transporter activity IEP Neighborhood
BP GO:0035556 intracellular signal transduction IEP Neighborhood
MF GO:0036094 small molecule binding IEP Neighborhood
MF GO:0042623 ATPase activity, coupled IEP Neighborhood
MF GO:0042626 ATPase activity, coupled to transmembrane movement of substances IEP Neighborhood
MF GO:0042910 xenobiotic transmembrane transporter activity IEP Neighborhood
MF GO:0043167 ion binding IEP Neighborhood
MF GO:0043168 anion binding IEP Neighborhood
MF GO:0043492 ATPase activity, coupled to movement of substances IEP Neighborhood
MF GO:0048037 cofactor binding IEP Neighborhood
MF GO:0050662 coenzyme binding IEP Neighborhood
BP GO:0051179 localization IEP Neighborhood
BP GO:0051234 establishment of localization IEP Neighborhood
MF GO:0051536 iron-sulfur cluster binding IEP Neighborhood
MF GO:0051540 metal cluster binding IEP Neighborhood
BP GO:0055085 transmembrane transport IEP Neighborhood
MF GO:0070008 serine-type exopeptidase activity IEP Neighborhood
MF GO:1901265 nucleoside phosphate binding IEP Neighborhood
InterPro domains Description Start Stop
IPR001841 Znf_RING 138 181
No external refs found!