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  5. Solyc01g081320.4.1

Solyc01g081320.4.1


Description : Pentatricopeptide repeat-containing protein At5g27460 OS=Arabidopsis thaliana (sp|q3e911|pp400_arath : 429.0)


Gene families : OG0000235 (Archaeplastida) Phylogenetic Tree(s): OG0000235_tree ,
OG_05_0000298 (LandPlants) Phylogenetic Tree(s): OG_05_0000298_tree ,
OG_06_0011531 (SeedPlants) Phylogenetic Tree(s): OG_06_0011531_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc01g081320.4.1
Cluster HCCA: Cluster_125

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00002p00190720 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At1g02150... 0.04 Archaeplastida
AMTR_s00024p00251490 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At1g02150... 0.03 Archaeplastida
AMTR_s00135p00094440 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At5g09450,... 0.03 Archaeplastida
GSVIVT01018303001 No alias Pentatricopeptide repeat-containing protein At1g02150... 0.03 Archaeplastida
Gb_09452 No alias Pentatricopeptide repeat-containing protein At1g60770... 0.03 Archaeplastida
Gb_14576 No alias Pentatricopeptide repeat-containing protein At1g60770... 0.02 Archaeplastida
LOC_Os02g55310.1 No alias Pentatricopeptide repeat-containing protein At5g27460... 0.02 Archaeplastida
LOC_Os04g46010.1 No alias Pentatricopeptide repeat-containing protein At1g02150... 0.03 Archaeplastida
LOC_Os10g35730.1 No alias Pentatricopeptide repeat-containing protein At4g02820,... 0.02 Archaeplastida
Smo444770 No alias Pentatricopeptide repeat-containing protein At3g15590,... 0.02 Archaeplastida
Zm00001e007372_P001 No alias Pentatricopeptide repeat-containing protein At1g02150... 0.03 Archaeplastida
Zm00001e040185_P001 No alias Pentatricopeptide repeat-containing protein At1g07590,... 0.03 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0000155 phosphorelay sensor kinase activity IEP Neighborhood
MF GO:0000166 nucleotide binding IEP Neighborhood
BP GO:0003333 amino acid transmembrane transport IEP Neighborhood
MF GO:0003674 molecular_function IEP Neighborhood
MF GO:0004386 helicase activity IEP Neighborhood
MF GO:0004645 phosphorylase activity IEP Neighborhood
MF GO:0004673 protein histidine kinase activity IEP Neighborhood
MF GO:0005488 binding IEP Neighborhood
BP GO:0006813 potassium ion transport IEP Neighborhood
BP GO:0006865 amino acid transport IEP Neighborhood
MF GO:0008184 glycogen phosphorylase activity IEP Neighborhood
BP GO:0009314 response to radiation IEP Neighborhood
BP GO:0009416 response to light stimulus IEP Neighborhood
BP GO:0009581 detection of external stimulus IEP Neighborhood
BP GO:0009582 detection of abiotic stimulus IEP Neighborhood
BP GO:0009583 detection of light stimulus IEP Neighborhood
BP GO:0009584 detection of visible light IEP Neighborhood
BP GO:0009605 response to external stimulus IEP Neighborhood
BP GO:0009628 response to abiotic stimulus IEP Neighborhood
MF GO:0015079 potassium ion transmembrane transporter activity IEP Neighborhood
BP GO:0015711 organic anion transport IEP Neighborhood
BP GO:0015849 organic acid transport IEP Neighborhood
CC GO:0016459 myosin complex IEP Neighborhood
MF GO:0016462 pyrophosphatase activity IEP Neighborhood
MF GO:0016775 phosphotransferase activity, nitrogenous group as acceptor IEP Neighborhood
MF GO:0016787 hydrolase activity IEP Neighborhood
MF GO:0016817 hydrolase activity, acting on acid anhydrides IEP Neighborhood
MF GO:0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides IEP Neighborhood
MF GO:0017076 purine nucleotide binding IEP Neighborhood
MF GO:0017111 nucleoside-triphosphatase activity IEP Neighborhood
BP GO:0018298 protein-chromophore linkage IEP Neighborhood
MF GO:0032553 ribonucleotide binding IEP Neighborhood
MF GO:0032555 purine ribonucleotide binding IEP Neighborhood
BP GO:0034220 ion transmembrane transport IEP Neighborhood
MF GO:0043167 ion binding IEP Neighborhood
MF GO:0043168 anion binding IEP Neighborhood
CC GO:0044430 cytoskeletal part IEP Neighborhood
BP GO:0046942 carboxylic acid transport IEP Neighborhood
BP GO:0051606 detection of stimulus IEP Neighborhood
BP GO:0071702 organic substance transport IEP Neighborhood
BP GO:0071705 nitrogen compound transport IEP Neighborhood
BP GO:0071804 cellular potassium ion transport IEP Neighborhood
BP GO:0071805 potassium ion transmembrane transport IEP Neighborhood
MF GO:0097367 carbohydrate derivative binding IEP Neighborhood
BP GO:0098656 anion transmembrane transport IEP Neighborhood
MF GO:1901265 nucleoside phosphate binding IEP Neighborhood
BP GO:1903825 organic acid transmembrane transport IEP Neighborhood
BP GO:1905039 carboxylic acid transmembrane transport IEP Neighborhood
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 369 390
IPR002885 Pentatricopeptide_repeat 180 236
No external refs found!