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  5. Solyc01g090480.4.1

Solyc01g090480.4.1


Description : RNA-binding KH domain-containing protein PEPPER OS=Arabidopsis thaliana (sp|q9szh4|pep_arath : 88.6)


Gene families : OG0000393 (Archaeplastida) Phylogenetic Tree(s): OG0000393_tree ,
OG_05_0009206 (LandPlants) Phylogenetic Tree(s): OG_05_0009206_tree ,
OG_06_0011337 (SeedPlants) Phylogenetic Tree(s): OG_06_0011337_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc01g090480.4.1
Cluster HCCA: Cluster_146

Target Alias Description ECC score Gene Family Method Actions
AT5G46190 No alias RNA-binding KH domain-containing protein 0.04 Archaeplastida
AT5G64390 HEN4 RNA-binding KH domain-containing protein 0.04 Archaeplastida
GSVIVT01012514001 No alias KH domain-containing protein HEN4 OS=Arabidopsis thaliana 0.04 Archaeplastida
GSVIVT01038571001 No alias RNA-binding KH domain-containing protein RCF3... 0.03 Archaeplastida
MA_6622g0010 No alias KH domain-containing protein At4g18375 OS=Arabidopsis... 0.02 Archaeplastida
Mp3g04880.1 No alias RNA-binding KH domain-containing protein RCF3... 0.03 Archaeplastida
Zm00001e004486_P005 No alias KH domain-containing protein At4g18375 OS=Arabidopsis... 0.03 Archaeplastida
Zm00001e037947_P004 No alias no hits & (original description: none) 0.05 Archaeplastida
Zm00001e039986_P003 No alias KH domain-containing protein At4g18375 OS=Arabidopsis... 0.02 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEP Neighborhood
CC GO:0005681 spliceosomal complex IEP Neighborhood
MF GO:0008270 zinc ion binding IEP Neighborhood
BP GO:0008380 RNA splicing IEP Neighborhood
InterPro domains Description Start Stop
IPR004088 KH_dom_type_1 172 241
IPR004088 KH_dom_type_1 81 134
IPR004088 KH_dom_type_1 282 344
No external refs found!