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  5. Solyc01g090650.1.1

Solyc01g090650.1.1


Description : chromatin remodeling factor (Alc)


Gene families : OG0000082 (Archaeplastida) Phylogenetic Tree(s): OG0000082_tree ,
OG_05_0008796 (LandPlants) Phylogenetic Tree(s): OG_05_0008796_tree ,
OG_06_0009569 (SeedPlants) Phylogenetic Tree(s): OG_06_0009569_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc01g090650.1.1
Cluster HCCA: Cluster_137

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00059p00063470 evm_27.TU.AmTr_v1... Chromatin organisation.DNA methylation.RNA-independent... 0.02 Archaeplastida
AT4G31900 PKR2 chromatin remodeling factor, putative 0.03 Archaeplastida
Cpa|evm.model.tig00020848.66 No alias Probable helicase CHR10 OS=Arabidopsis thaliana 0.01 Archaeplastida
GSVIVT01035901001 No alias Chromatin organisation.chromatin remodeling... 0.03 Archaeplastida
LOC_Os06g08480.1 No alias chromatin remodeling factor (Chd3/Mi-2) 0.03 Archaeplastida
LOC_Os07g46590.1 No alias chromatin remodeling factor (Chd1). component CHR5 of... 0.02 Archaeplastida
MA_104034g0010 No alias chromatin remodeling factor (DDM1) 0.03 Archaeplastida
MA_10427682g0010 No alias no hits & (original description: none) 0.02 Archaeplastida
MA_42406g0010 No alias chromatin remodeling factor (DDM1) 0.02 Archaeplastida
Pp3c13_14440V3.1 No alias transcription regulatory protein SNF2, putative 0.02 Archaeplastida
Pp3c18_19045V3.1 No alias chromatin remodeling factor CHD3 (PICKLE) 0.02 Archaeplastida
Pp3c27_3890V3.1 No alias Homeotic gene regulator 0.03 Archaeplastida
Zm00001e005517_P002 No alias chromatin remodeling factor (DDM1) 0.03 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0005524 ATP binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0004435 phosphatidylinositol phospholipase C activity IEP Neighborhood
MF GO:0004620 phospholipase activity IEP Neighborhood
MF GO:0004629 phospholipase C activity IEP Neighborhood
BP GO:0005985 sucrose metabolic process IEP Neighborhood
MF GO:0008081 phosphoric diester hydrolase activity IEP Neighborhood
MF GO:0016157 sucrose synthase activity IEP Neighborhood
MF GO:0016298 lipase activity IEP Neighborhood
MF GO:0016846 carbon-sulfur lyase activity IEP Neighborhood
BP GO:0030001 metal ion transport IEP Neighborhood
CC GO:0030119 AP-type membrane coat adaptor complex IEP Neighborhood
CC GO:0030131 clathrin adaptor complex IEP Neighborhood
InterPro domains Description Start Stop
IPR001650 Helicase_C 363 483
IPR000330 SNF2_N 57 342
No external refs found!