1. Home
  2. Species
  3. Solanum lycopersicum
  4. Sequence
  5. Solyc01g090830.2.1

Solyc01g090830.2.1


Description : C2H2 zinc finger transcription factor


Gene families : OG0000103 (Archaeplastida) Phylogenetic Tree(s): OG0000103_tree ,
OG_05_0000039 (LandPlants) Phylogenetic Tree(s): OG_05_0000039_tree ,
OG_06_0000340 (SeedPlants) Phylogenetic Tree(s): OG_06_0000340_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc01g090830.2.1
Cluster HCCA: Cluster_47

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00001p00024970 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.C2H2 zinc... 0.02 Archaeplastida
AMTR_s00106p00120810 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.C2H2 zinc... 0.04 Archaeplastida
AT1G02040 No alias C2H2-type zinc finger family protein 0.07 Archaeplastida
AT3G10470 No alias C2H2-type zinc finger family protein 0.03 Archaeplastida
AT5G04390 No alias C2H2-type zinc finger family protein 0.04 Archaeplastida
GSVIVT01023887001 No alias RNA biosynthesis.transcriptional activation.C2H2 zinc... 0.03 Archaeplastida
Gb_37343 No alias C2H2 zinc finger transcription factor 0.02 Archaeplastida
LOC_Os02g44120.1 No alias C2H2 zinc finger transcription factor 0.09 Archaeplastida
LOC_Os03g60570.1 No alias C2H2 zinc finger transcription factor 0.03 Archaeplastida
LOC_Os04g46670.1 No alias C2H2 zinc finger transcription factor 0.06 Archaeplastida
Solyc05g055500.1.1 No alias C2H2 zinc finger transcription factor 0.03 Archaeplastida
Zm00001e002022_P001 No alias C2H2 zinc finger transcription factor 0.03 Archaeplastida
Zm00001e002344_P001 No alias C2H2 zinc finger transcription factor 0.03 Archaeplastida
Zm00001e007312_P001 No alias C2H2 zinc finger transcription factor 0.08 Archaeplastida
Zm00001e023171_P001 No alias C2H2 zinc finger transcription factor 0.03 Archaeplastida
Zm00001e030114_P001 No alias C2H2 zinc finger transcription factor 0.02 Archaeplastida
Zm00001e038054_P001 No alias C2H2 zinc finger transcription factor 0.07 Archaeplastida
Zm00001e041517_P001 No alias no hits & (original description: none) 0.02 Archaeplastida
Zm00001e041518_P001 No alias C2H2 zinc finger transcription factor 0.07 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
Toggle parental
Type GO Term Name Evidence Source
MF GO:0004427 inorganic diphosphatase activity IEP Neighborhood
MF GO:0005319 lipid transporter activity IEP Neighborhood
CC GO:0005737 cytoplasm IEP Neighborhood
BP GO:0006813 potassium ion transport IEP Neighborhood
BP GO:0006835 dicarboxylic acid transport IEP Neighborhood
BP GO:0006869 lipid transport IEP Neighborhood
MF GO:0015079 potassium ion transmembrane transporter activity IEP Neighborhood
BP GO:0015711 organic anion transport IEP Neighborhood
BP GO:0015740 C4-dicarboxylate transport IEP Neighborhood
BP GO:0015743 malate transport IEP Neighborhood
BP GO:0015849 organic acid transport IEP Neighborhood
MF GO:0016307 phosphatidylinositol phosphate kinase activity IEP Neighborhood
CC GO:0030118 clathrin coat IEP Neighborhood
CC GO:0030120 vesicle coat IEP Neighborhood
CC GO:0030125 clathrin vesicle coat IEP Neighborhood
CC GO:0030130 clathrin coat of trans-Golgi network vesicle IEP Neighborhood
CC GO:0030132 clathrin coat of coated pit IEP Neighborhood
CC GO:0044431 Golgi apparatus part IEP Neighborhood
CC GO:0044433 cytoplasmic vesicle part IEP Neighborhood
CC GO:0044459 plasma membrane part IEP Neighborhood
BP GO:0046488 phosphatidylinositol metabolic process IEP Neighborhood
BP GO:0046942 carboxylic acid transport IEP Neighborhood
BP GO:0061024 membrane organization IEP Neighborhood
BP GO:0071702 organic substance transport IEP Neighborhood
BP GO:0071804 cellular potassium ion transport IEP Neighborhood
BP GO:0071805 potassium ion transmembrane transport IEP Neighborhood
CC GO:0098797 plasma membrane protein complex IEP Neighborhood
BP GO:0120009 intermembrane lipid transfer IEP Neighborhood
MF GO:0120013 intermembrane lipid transfer activity IEP Neighborhood

No InterPro domains available for this sequence

No external refs found!