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  5. Solyc01g091750.3.1

Solyc01g091750.3.1


Description : RS31/40/41 RNA splicing factor


Gene families : OG0001617 (Archaeplastida) Phylogenetic Tree(s): OG0001617_tree ,
OG_05_0001638 (LandPlants) Phylogenetic Tree(s): OG_05_0001638_tree ,
OG_06_0001180 (SeedPlants) Phylogenetic Tree(s): OG_06_0001180_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc01g091750.3.1
Cluster HCCA: Cluster_131

Target Alias Description ECC score Gene Family Method Actions
AT5G52040 At-RS41, RS41, ATRSP41 RNA-binding (RRM/RBD/RNP motifs) family protein 0.04 Archaeplastida
Cre16.g674250 No alias RNA processing.RNA splicing.spliceosome-associated... 0.03 Archaeplastida
Gb_34503 No alias RS31/40/41 RNA splicing factor 0.03 Archaeplastida
LOC_Os04g02870.1 No alias RS31/40/41 RNA splicing factor 0.03 Archaeplastida
MA_10436130g0020 No alias RS31/40/41 RNA splicing factor 0.03 Archaeplastida
MA_111545g0020 No alias RS31/40/41 RNA splicing factor 0.04 Archaeplastida
MA_187587g0020 No alias RS31/40/41 RNA splicing factor 0.05 Archaeplastida
MA_84361g0010 No alias RS31/40/41 RNA splicing factor 0.03 Archaeplastida
Mp8g04570.1 No alias RS31/40/41 RNA splicing factor 0.05 Archaeplastida
Zm00001e013507_P001 No alias RS31/40/41 RNA splicing factor 0.03 Archaeplastida
Zm00001e025270_P001 No alias RS31/40/41 RNA splicing factor 0.04 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
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Type GO Term Name Evidence Source
CC GO:0000775 chromosome, centromeric region IEP Neighborhood
MF GO:0003682 chromatin binding IEP Neighborhood
MF GO:0003697 single-stranded DNA binding IEP Neighborhood
MF GO:0003905 alkylbase DNA N-glycosylase activity IEP Neighborhood
MF GO:0004523 RNA-DNA hybrid ribonuclease activity IEP Neighborhood
MF GO:0005515 protein binding IEP Neighborhood
BP GO:0006284 base-excision repair IEP Neighborhood
BP GO:0006355 regulation of transcription, DNA-templated IEP Neighborhood
BP GO:0007059 chromosome segregation IEP Neighborhood
MF GO:0008168 methyltransferase activity IEP Neighborhood
MF GO:0008170 N-methyltransferase activity IEP Neighborhood
MF GO:0008276 protein methyltransferase activity IEP Neighborhood
CC GO:0008287 protein serine/threonine phosphatase complex IEP Neighborhood
MF GO:0008725 DNA-3-methyladenine glycosylase activity IEP Neighborhood
BP GO:0009889 regulation of biosynthetic process IEP Neighborhood
BP GO:0010468 regulation of gene expression IEP Neighborhood
BP GO:0010556 regulation of macromolecule biosynthetic process IEP Neighborhood
MF GO:0016278 lysine N-methyltransferase activity IEP Neighborhood
MF GO:0016279 protein-lysine N-methyltransferase activity IEP Neighborhood
MF GO:0016307 phosphatidylinositol phosphate kinase activity IEP Neighborhood
MF GO:0016741 transferase activity, transferring one-carbon groups IEP Neighborhood
MF GO:0016799 hydrolase activity, hydrolyzing N-glycosyl compounds IEP Neighborhood
MF GO:0018024 histone-lysine N-methyltransferase activity IEP Neighborhood
MF GO:0019104 DNA N-glycosylase activity IEP Neighborhood
MF GO:0019208 phosphatase regulator activity IEP Neighborhood
BP GO:0019219 regulation of nucleobase-containing compound metabolic process IEP Neighborhood
BP GO:0019222 regulation of metabolic process IEP Neighborhood
MF GO:0019888 protein phosphatase regulator activity IEP Neighborhood
BP GO:0022402 cell cycle process IEP Neighborhood
CC GO:0030289 protein phosphatase 4 complex IEP Neighborhood
BP GO:0031323 regulation of cellular metabolic process IEP Neighborhood
BP GO:0031326 regulation of cellular biosynthetic process IEP Neighborhood
MF GO:0042054 histone methyltransferase activity IEP Neighborhood
MF GO:0042393 histone binding IEP Neighborhood
MF GO:0043733 DNA-3-methylbase glycosylase activity IEP Neighborhood
BP GO:0045132 meiotic chromosome segregation IEP Neighborhood
BP GO:0050789 regulation of biological process IEP Neighborhood
BP GO:0050794 regulation of cellular process IEP Neighborhood
BP GO:0051171 regulation of nitrogen compound metabolic process IEP Neighborhood
BP GO:0051252 regulation of RNA metabolic process IEP Neighborhood
BP GO:0060255 regulation of macromolecule metabolic process IEP Neighborhood
BP GO:0065007 biological regulation IEP Neighborhood
BP GO:0080090 regulation of primary metabolic process IEP Neighborhood
CC GO:0098687 chromosomal region IEP Neighborhood
BP GO:0098813 nuclear chromosome segregation IEP Neighborhood
BP GO:1903046 meiotic cell cycle process IEP Neighborhood
CC GO:1903293 phosphatase complex IEP Neighborhood
BP GO:1903506 regulation of nucleic acid-templated transcription IEP Neighborhood
BP GO:2000112 regulation of cellular macromolecule biosynthetic process IEP Neighborhood
BP GO:2001141 regulation of RNA biosynthetic process IEP Neighborhood
InterPro domains Description Start Stop
IPR000504 RRM_dom 4 63
IPR000504 RRM_dom 96 158
No external refs found!