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  5. AMTR_s00022p00023600

AMTR_s00022p00023600 (evm_27.TU.AmTr_v1.0_sc...)


Aliases : evm_27.TU.AmTr_v1.0_scaffold00022.8

Description : Pentatricopeptide repeat-containing protein At1g50270 OS=Arabidopsis thaliana


Gene families : OG0000000 (Archaeplastida) Phylogenetic Tree(s): No tree available for this family ,
OG_05_0000000 (LandPlants) Phylogenetic Tree(s): OG_05_0000000_tree ,
OG_06_0000000 (SeedPlants) Phylogenetic Tree(s): OG_06_0000000_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00022p00023600
Cluster HCCA: Cluster_55

Target Alias Description ECC score Gene Family Method Actions
AT1G08070 OTP82 Tetratricopeptide repeat (TPR)-like superfamily protein 0.02 Archaeplastida
AT1G59720 CRR28 Tetratricopeptide repeat (TPR)-like superfamily protein 0.02 Archaeplastida
LOC_Os01g19380.1 No alias Putative pentatricopeptide repeat-containing protein... 0.03 Archaeplastida
LOC_Os09g39970.1 No alias Putative pentatricopeptide repeat-containing protein... 0.03 Archaeplastida
LOC_Os12g36620.1 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.05 Archaeplastida
MA_482767g0010 No alias Pentatricopeptide repeat-containing protein At1g20230... 0.03 Archaeplastida
Smo117959 No alias Pentatricopeptide repeat-containing protein At4g33990... 0.03 Archaeplastida
Smo72257 No alias Pentatricopeptide repeat-containing protein At3g49170,... 0.04 Archaeplastida
Zm00001e000523_P001 No alias Pentatricopeptide repeat-containing protein At5g15300... 0.04 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0005216 ion channel activity IEP Neighborhood
MF GO:0005244 voltage-gated ion channel activity IEP Neighborhood
MF GO:0005247 voltage-gated chloride channel activity IEP Neighborhood
MF GO:0005253 anion channel activity IEP Neighborhood
MF GO:0005254 chloride channel activity IEP Neighborhood
BP GO:0006820 anion transport IEP Neighborhood
BP GO:0006821 chloride transport IEP Neighborhood
MF GO:0008308 voltage-gated anion channel activity IEP Neighborhood
MF GO:0008509 anion transmembrane transporter activity IEP Neighborhood
MF GO:0015103 inorganic anion transmembrane transporter activity IEP Neighborhood
MF GO:0015108 chloride transmembrane transporter activity IEP Neighborhood
MF GO:0015267 channel activity IEP Neighborhood
BP GO:0015698 inorganic anion transport IEP Neighborhood
MF GO:0016624 oxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor IEP Neighborhood
MF GO:0016903 oxidoreductase activity, acting on the aldehyde or oxo group of donors IEP Neighborhood
MF GO:0022803 passive transmembrane transporter activity IEP Neighborhood
MF GO:0022832 voltage-gated channel activity IEP Neighborhood
MF GO:0022836 gated channel activity IEP Neighborhood
MF GO:0022838 substrate-specific channel activity IEP Neighborhood
MF GO:0022839 ion gated channel activity IEP Neighborhood
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 324 372
IPR002885 Pentatricopeptide_repeat 216 251
IPR002885 Pentatricopeptide_repeat 470 498
IPR002885 Pentatricopeptide_repeat 105 132
IPR002885 Pentatricopeptide_repeat 403 427
IPR002885 Pentatricopeptide_repeat 189 214
IPR002885 Pentatricopeptide_repeat 76 102
No external refs found!