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  5. Solyc01g095480.4.1

Solyc01g095480.4.1


Description : component RRP41 of exosome EXO9 core complex


Gene families : OG0001779 (Archaeplastida) Phylogenetic Tree(s): OG0001779_tree ,
OG_05_0008448 (LandPlants) Phylogenetic Tree(s): OG_05_0008448_tree ,
OG_06_0009993 (SeedPlants) Phylogenetic Tree(s): OG_06_0009993_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc01g095480.4.1
Cluster HCCA: Cluster_142

Target Alias Description ECC score Gene Family Method Actions
AT3G61620 RRP41 3'-5'-exoribonuclease family protein 0.06 Archaeplastida
Cre06.g284500 No alias RNA processing.RNA decay.exosome complex.EXO9 core... 0.03 Archaeplastida
Cre17.g697624 No alias RNA processing.RNA decay.exosome complex.EXO9 core... 0.04 Archaeplastida
GSVIVT01027043001 No alias RNA processing.RNA decay.exosome complex.EXO9 core... 0.03 Archaeplastida
LOC_Os03g62720.1 No alias component MTR3/RRP41L of exosome EXO9 core complex 0.03 Archaeplastida
LOC_Os08g02360.1 No alias component MTR3/RRP41L of exosome EXO9 core complex 0.03 Archaeplastida
LOC_Os09g07820.1 No alias component RRP41 of exosome EXO9 core complex 0.05 Archaeplastida
MA_7833167g0010 No alias no hits & (original description: none) 0.02 Archaeplastida
Mp2g19580.1 No alias component MTR3/RRP41L of exosome EXO9 core complex 0.02 Archaeplastida
Mp4g24080.1 No alias component RRP41 of exosome EXO9 core complex 0.05 Archaeplastida
Pp3c3_18310V3.1 No alias 3\-5\-exoribonuclease family protein 0.02 Archaeplastida
Pp3s48_50V3.1 No alias 3\-5\-exoribonuclease family protein 0.03 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
BP GO:0000154 rRNA modification IEP Neighborhood
BP GO:0001510 RNA methylation IEP Neighborhood
MF GO:0003674 molecular_function IEP Neighborhood
MF GO:0003676 nucleic acid binding IEP Neighborhood
MF GO:0003677 DNA binding IEP Neighborhood
MF GO:0003684 damaged DNA binding IEP Neighborhood
MF GO:0003697 single-stranded DNA binding IEP Neighborhood
MF GO:0003723 RNA binding IEP Neighborhood
MF GO:0004809 tRNA (guanine-N2-)-methyltransferase activity IEP Neighborhood
MF GO:0005488 binding IEP Neighborhood
CC GO:0005741 mitochondrial outer membrane IEP Neighborhood
BP GO:0006139 nucleobase-containing compound metabolic process IEP Neighborhood
BP GO:0006289 nucleotide-excision repair IEP Neighborhood
BP GO:0006364 rRNA processing IEP Neighborhood
BP GO:0006396 RNA processing IEP Neighborhood
BP GO:0006725 cellular aromatic compound metabolic process IEP Neighborhood
MF GO:0008168 methyltransferase activity IEP Neighborhood
MF GO:0008170 N-methyltransferase activity IEP Neighborhood
MF GO:0008173 RNA methyltransferase activity IEP Neighborhood
MF GO:0008175 tRNA methyltransferase activity IEP Neighborhood
MF GO:0008649 rRNA methyltransferase activity IEP Neighborhood
MF GO:0008757 S-adenosylmethionine-dependent methyltransferase activity IEP Neighborhood
BP GO:0009451 RNA modification IEP Neighborhood
BP GO:0010498 proteasomal protein catabolic process IEP Neighborhood
BP GO:0016070 RNA metabolic process IEP Neighborhood
BP GO:0016072 rRNA metabolic process IEP Neighborhood
MF GO:0016423 tRNA (guanine) methyltransferase activity IEP Neighborhood
MF GO:0016435 rRNA (guanine) methyltransferase activity IEP Neighborhood
MF GO:0016741 transferase activity, transferring one-carbon groups IEP Neighborhood
MF GO:0016779 nucleotidyltransferase activity IEP Neighborhood
MF GO:0019843 rRNA binding IEP Neighborhood
CC GO:0019867 outer membrane IEP Neighborhood
BP GO:0030163 protein catabolic process IEP Neighborhood
CC GO:0031090 organelle membrane IEP Neighborhood
BP GO:0031167 rRNA methylation IEP Neighborhood
CC GO:0031966 mitochondrial membrane IEP Neighborhood
CC GO:0031968 organelle outer membrane IEP Neighborhood
BP GO:0032259 methylation IEP Neighborhood
BP GO:0034470 ncRNA processing IEP Neighborhood
BP GO:0034641 cellular nitrogen compound metabolic process IEP Neighborhood
BP GO:0034660 ncRNA metabolic process IEP Neighborhood
BP GO:0036265 RNA (guanine-N7)-methylation IEP Neighborhood
BP GO:0043161 proteasome-mediated ubiquitin-dependent protein catabolic process IEP Neighborhood
BP GO:0043414 macromolecule methylation IEP Neighborhood
BP GO:0046483 heterocycle metabolic process IEP Neighborhood
BP GO:0070475 rRNA base methylation IEP Neighborhood
BP GO:0070476 rRNA (guanine-N7)-methylation IEP Neighborhood
BP GO:0090304 nucleic acid metabolic process IEP Neighborhood
MF GO:0097159 organic cyclic compound binding IEP Neighborhood
CC GO:0098588 bounding membrane of organelle IEP Neighborhood
CC GO:0098805 whole membrane IEP Neighborhood
MF GO:0140098 catalytic activity, acting on RNA IEP Neighborhood
MF GO:0140102 catalytic activity, acting on a rRNA IEP Neighborhood
BP GO:1901360 organic cyclic compound metabolic process IEP Neighborhood
MF GO:1901363 heterocyclic compound binding IEP Neighborhood
InterPro domains Description Start Stop
IPR015847 ExoRNase_PH_dom2 152 215
IPR001247 ExoRNase_PH_dom1 18 148
No external refs found!