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  5. Solyc01g095740.4.1

Solyc01g095740.4.1


Description : DEAD-box ATP-dependent RNA helicase 31 OS=Arabidopsis thaliana (sp|q9ffq1|rh31_arath : 803.0)


Gene families : OG0001868 (Archaeplastida) Phylogenetic Tree(s): OG0001868_tree ,
OG_05_0002062 (LandPlants) Phylogenetic Tree(s): OG_05_0002062_tree ,
OG_06_0001848 (SeedPlants) Phylogenetic Tree(s): OG_06_0001848_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc01g095740.4.1
Cluster HCCA: Cluster_75

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00009p00261910 evm_27.TU.AmTr_v1... Probable DEAD-box ATP-dependent RNA helicase 48... 0.02 Archaeplastida
AMTR_s00107p00082420 evm_27.TU.AmTr_v1... DEAD-box ATP-dependent RNA helicase 26 OS=Arabidopsis thaliana 0.03 Archaeplastida
AT5G08610 No alias P-loop containing nucleoside triphosphate hydrolases... 0.11 Archaeplastida
GSVIVT01019804001 No alias DEAD-box ATP-dependent RNA helicase 48 OS=Oryza sativa... 0.04 Archaeplastida
GSVIVT01027084001 No alias DEAD-box ATP-dependent RNA helicase 31 OS=Arabidopsis thaliana 0.03 Archaeplastida
LOC_Os01g43120.1 No alias DEAD-box ATP-dependent RNA helicase 25 OS=Oryza sativa... 0.04 Archaeplastida
LOC_Os06g33520.1 No alias DEAD-box ATP-dependent RNA helicase 31 OS=Oryza sativa... 0.02 Archaeplastida
Zm00001e020452_P002 No alias DEAD-box ATP-dependent RNA helicase 25 OS=Oryza sativa... 0.04 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
MF GO:0005524 ATP binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003697 single-stranded DNA binding IEP Neighborhood
MF GO:0003723 RNA binding IEP Neighborhood
MF GO:0003885 D-arabinono-1,4-lactone oxidase activity IEP Neighborhood
MF GO:0008270 zinc ion binding IEP Neighborhood
MF GO:0008565 protein transporter activity IEP Neighborhood
MF GO:0016899 oxidoreductase activity, acting on the CH-OH group of donors, oxygen as acceptor IEP Neighborhood
MF GO:0019843 rRNA binding IEP Neighborhood
MF GO:0032977 membrane insertase activity IEP Neighborhood
MF GO:0043169 cation binding IEP Neighborhood
MF GO:0046872 metal ion binding IEP Neighborhood
MF GO:0046914 transition metal ion binding IEP Neighborhood
InterPro domains Description Start Stop
IPR011545 DEAD/DEAH_box_helicase_dom 427 604
IPR001650 Helicase_C 646 755
No external refs found!