Solyc01g096070.3.1


Description : transcription factor (ARF)


Gene families : OG0000080 (Archaeplastida) Phylogenetic Tree(s): OG0000080_tree ,
OG_05_0000395 (LandPlants) Phylogenetic Tree(s): OG_05_0000395_tree ,
OG_06_0003855 (SeedPlants) Phylogenetic Tree(s): OG_06_0003855_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc01g096070.3.1
Cluster HCCA: Cluster_28

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00007p00267580 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.B3... 0.03 Archaeplastida
AMTR_s00092p00072950 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.B3... 0.04 Archaeplastida
AMTR_s00148p00046020 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.B3... 0.03 Archaeplastida
AT2G33860 ARF3, ETT Transcriptional factor B3 family protein /... 0.03 Archaeplastida
AT5G37020 ARF8, ATARF8 auxin response factor 8 0.04 Archaeplastida
GSVIVT01020805001 No alias RNA biosynthesis.transcriptional activation.B3... 0.03 Archaeplastida
GSVIVT01021552001 No alias RNA biosynthesis.transcriptional activation.B3... 0.03 Archaeplastida
LOC_Os01g13520.1 No alias transcription factor (ARF) 0.09 Archaeplastida
LOC_Os01g48060.1 No alias transcription factor (ARF) 0.04 Archaeplastida
LOC_Os04g56850.1 No alias transcription factor (ARF) 0.04 Archaeplastida
LOC_Os05g43920.1 No alias transcription factor (ARF) 0.08 Archaeplastida
LOC_Os05g48870.1 No alias transcription factor (ARF) 0.07 Archaeplastida
LOC_Os10g33940.1 No alias transcription factor (ARF) 0.02 Archaeplastida
MA_10432580g0010 No alias transcription factor (ARF) 0.02 Archaeplastida
Pp3c26_11550V3.1 No alias auxin response factor 6 0.02 Archaeplastida
Zm00001e004554_P002 No alias transcription factor (ARF) 0.03 Archaeplastida
Zm00001e006640_P002 No alias transcription factor (ARF) 0.03 Archaeplastida
Zm00001e012670_P001 No alias transcription factor (ARF) 0.03 Archaeplastida
Zm00001e014833_P002 No alias transcription factor (ARF) 0.02 Archaeplastida
Zm00001e030325_P003 No alias transcription factor (ARF) 0.03 Archaeplastida
Zm00001e041866_P001 No alias transcription factor (ARF) 0.03 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA Interproscan
CC GO:0005634 nucleus IEA Interproscan
BP GO:0006355 regulation of transcription, DNA-templated IEA Interproscan
BP GO:0009725 response to hormone IEA Interproscan
Type GO Term Name Evidence Source
CC GO:0000159 protein phosphatase type 2A complex IEP Neighborhood
MF GO:0003700 DNA-binding transcription factor activity IEP Neighborhood
BP GO:0007165 signal transduction IEP Neighborhood
CC GO:0008287 protein serine/threonine phosphatase complex IEP Neighborhood
MF GO:0019208 phosphatase regulator activity IEP Neighborhood
MF GO:0019888 protein phosphatase regulator activity IEP Neighborhood
CC GO:0033643 host cell part IEP Neighborhood
CC GO:0033646 host intracellular part IEP Neighborhood
CC GO:0033647 host intracellular organelle IEP Neighborhood
CC GO:0033648 host intracellular membrane-bounded organelle IEP Neighborhood
CC GO:0042025 host cell nucleus IEP Neighborhood
CC GO:0044217 other organism part IEP Neighborhood
MF GO:0140110 transcription regulator activity IEP Neighborhood
CC GO:1902494 catalytic complex IEP Neighborhood
CC GO:1903293 phosphatase complex IEP Neighborhood
InterPro domains Description Start Stop
IPR033389 AUX/IAA_dom 551 660
IPR003340 B3_DNA-bd 111 211
IPR010525 Auxin_resp 237 316
No external refs found!