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  5. Solyc01g096210.4.1

Solyc01g096210.4.1


Description : Pentatricopeptide repeat-containing protein At5g16420, mitochondrial OS=Arabidopsis thaliana (sp|q9ffe3|pp388_arath : 641.0)


Gene families : OG0000198 (Archaeplastida) Phylogenetic Tree(s): OG0000198_tree ,
OG_05_0000086 (LandPlants) Phylogenetic Tree(s): OG_05_0000086_tree ,
OG_06_0000170 (SeedPlants) Phylogenetic Tree(s): OG_06_0000170_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc01g096210.4.1
Cluster HCCA: Cluster_22

Target Alias Description ECC score Gene Family Method Actions
MA_56119g0010 No alias Putative pentatricopeptide repeat-containing protein... 0.05 Archaeplastida
Solyc01g058205.1.1 No alias Pentatricopeptide repeat-containing protein At3g48810... 0.05 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
Toggle parental
Type GO Term Name Evidence Source
BP GO:0000413 protein peptidyl-prolyl isomerization IEP Neighborhood
MF GO:0003682 chromatin binding IEP Neighborhood
MF GO:0003755 peptidyl-prolyl cis-trans isomerase activity IEP Neighborhood
MF GO:0005488 binding IEP Neighborhood
BP GO:0006260 DNA replication IEP Neighborhood
BP GO:0006886 intracellular protein transport IEP Neighborhood
MF GO:0016859 cis-trans isomerase activity IEP Neighborhood
BP GO:0018193 peptidyl-amino acid modification IEP Neighborhood
BP GO:0018208 peptidyl-proline modification IEP Neighborhood
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 135 196
IPR002885 Pentatricopeptide_repeat 398 423
IPR002885 Pentatricopeptide_repeat 365 390
IPR002885 Pentatricopeptide_repeat 426 475
IPR002885 Pentatricopeptide_repeat 217 263
IPR002885 Pentatricopeptide_repeat 291 336
No external refs found!