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  5. AMTR_s00022p00050920

AMTR_s00022p00050920 (evm_27.TU.AmTr_v1.0_sc...)


Aliases : evm_27.TU.AmTr_v1.0_scaffold00022.30

Description : Pentatricopeptide repeat-containing protein At4g38150 OS=Arabidopsis thaliana


Gene families : OG0010067 (Archaeplastida) Phylogenetic Tree(s): OG0010067_tree ,
OG_05_0010093 (LandPlants) Phylogenetic Tree(s): OG_05_0010093_tree ,
OG_06_0008325 (SeedPlants) Phylogenetic Tree(s): OG_06_0008325_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00022p00050920
Cluster HCCA: Cluster_257

Target Alias Description ECC score Gene Family Method Actions
Gb_29332 No alias Pentatricopeptide repeat-containing protein At4g38150... 0.07 Archaeplastida
LOC_Os01g36600.1 No alias Pentatricopeptide repeat-containing protein At4g38150... 0.03 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity IEP Neighborhood
CC GO:0005634 nucleus IEP Neighborhood
BP GO:0006351 transcription, DNA-templated IEP Neighborhood
MF GO:0034062 5'-3' RNA polymerase activity IEP Neighborhood
CC GO:0043227 membrane-bounded organelle IEP Neighborhood
CC GO:0043231 intracellular membrane-bounded organelle IEP Neighborhood
BP GO:0097659 nucleic acid-templated transcription IEP Neighborhood
MF GO:0097747 RNA polymerase activity IEP Neighborhood
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 168 193
IPR002885 Pentatricopeptide_repeat 270 298
IPR002885 Pentatricopeptide_repeat 196 245
No external refs found!