Solyc01g096390.4.1

Description : subunit 1 of Pol V RNA polymerase

Gene families : OG0000599 (Archaeplastida) Phylogenetic Tree(s): OG0000599_tree ,
OG_05_0004225 (LandPlants) Phylogenetic Tree(s): OG_05_0004225_tree ,
OG_06_0004863 (SeedPlants) Phylogenetic Tree(s): OG_06_0004863_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Solyc01g096390.4.1
Cluster	HCCA: Cluster_173

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00023p00196820	evm_27.TU.AmTr_v1...	RNA biosynthesis.DNA-dependent RNA polymerase (Pol)...	0.03	Archaeplastida
AMTR_s00131p00068700	No alias	RNA biosynthesis.DNA-dependent RNA polymerase (Pol)...	0.04	Archaeplastida
AT1G63020	NRPD1A, POL IVA,...	nuclear RNA polymerase D1A	0.05	Archaeplastida
AT2G40030	DRD3, ATNRPD1B,...	nuclear RNA polymerase D1B	0.06	Archaeplastida
AT4G35800	RNA_POL_II_LSRNA_...	RNA polymerase II large subunit	0.05	Archaeplastida
AT5G60040	NRPC1	nuclear RNA polymerase C1	0.07	Archaeplastida
Cpa\|evm.model.tig00000241.15	No alias	RNA biosynthesis.DNA-dependent RNA polymerase (Pol)...	0.02	Archaeplastida
Cpa\|evm.model.tig00022075.5	No alias	DNA-directed RNA polymerase III subunit 1 OS=Arabidopsis thaliana	0.01	Archaeplastida
Cpa\|evm.model.tig00022075.6	No alias	DNA-directed RNA polymerase III subunit 1 OS=Arabidopsis thaliana	0.02	Archaeplastida
Cre03.g165750	No alias	RNA biosynthesis.DNA-dependent RNA polymerase (Pol)...	0.02	Archaeplastida
Cre16.g680900	No alias	RNA biosynthesis.DNA-dependent RNA polymerase (Pol)...	0.02	Archaeplastida
GSVIVT01013491001	No alias	RNA biosynthesis.DNA-dependent RNA polymerase (Pol)...	0.11	Archaeplastida
GSVIVT01019869001	No alias	RNA biosynthesis.DNA-dependent RNA polymerase (Pol)...	0.03	Archaeplastida
Gb_06029	No alias	subunit 1 of Pol II RNA polymerase	0.02	Archaeplastida
Gb_33197	No alias	subunit 1 of Pol II RNA polymerase	0.05	Archaeplastida
LOC_Os02g05880.1	No alias	subunit 1 of Pol V RNA polymerase	0.1	Archaeplastida
LOC_Os04g41490.1	No alias	subunit 1 of Pol III RNA polymerase	0.07	Archaeplastida
LOC_Os05g05860.1	No alias	subunit 1 of Pol II RNA polymerase	0.01	Archaeplastida
MA_10436091g0010	No alias	DNA-directed RNA polymerase III subunit 1 OS=Arabidopsis...	0.02	Archaeplastida
MA_8544g0010	No alias	subunit 1 of Pol II RNA polymerase	0.04	Archaeplastida
Mp3g15530.1	No alias	subunit 1 of Pol IV RNA polymerase. subunit 1 of Pol V...	0.04	Archaeplastida
Mp4g14340.1	No alias	subunit 1 of Pol II RNA polymerase	0.04	Archaeplastida
Pp3c14_14540V3.1	No alias	RNA polymerase II large subunit	0.01	Archaeplastida
Pp3c15_5270V3.1	No alias	nuclear RNA polymerase D1B	0.03	Archaeplastida
Pp3c17_4860V3.1	No alias	nuclear RNA polymerase C1	0.04	Archaeplastida
Pp3c1_32300V3.1	No alias	RNA polymerase II large subunit	0.04	Archaeplastida
Zm00001e025206_P001	No alias	subunit 1 of Pol V RNA polymerase	0.11	Archaeplastida

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	IEA	Interproscan
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0003899	DNA-directed 5'-3' RNA polymerase activity	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006351	transcription, DNA-templated	IEA	Interproscan
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009059	macromolecule biosynthetic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016070	RNA metabolic process	None	Extended
MF	GO:0016740	transferase activity	None	Extended
MF	GO:0016772	transferase activity, transferring phosphorus-containing groups	None	Extended
MF	GO:0016779	nucleotidyltransferase activity	None	Extended
BP	GO:0018130	heterocycle biosynthetic process	None	Extended
BP	GO:0019438	aromatic compound biosynthetic process	None	Extended
BP	GO:0032774	RNA biosynthetic process	None	Extended
MF	GO:0034062	5'-3' RNA polymerase activity	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034645	cellular macromolecule biosynthetic process	None	Extended
BP	GO:0034654	nucleobase-containing compound biosynthetic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044271	cellular nitrogen compound biosynthetic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
BP	GO:0097659	nucleic acid-templated transcription	None	Extended
MF	GO:0097747	RNA polymerase activity	None	Extended
MF	GO:0140098	catalytic activity, acting on RNA	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
BP	GO:1901362	organic cyclic compound biosynthetic process	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	IEP	Neighborhood
BP	GO:0000272	polysaccharide catabolic process	IEP	Neighborhood
BP	GO:0000723	telomere maintenance	IEP	Neighborhood
BP	GO:0000724	double-strand break repair via homologous recombination	IEP	Neighborhood
BP	GO:0000725	recombinational repair	IEP	Neighborhood
MF	GO:0003690	double-stranded DNA binding	IEP	Neighborhood
MF	GO:0003950	NAD+ ADP-ribosyltransferase activity	IEP	Neighborhood
MF	GO:0005515	protein binding	IEP	Neighborhood
MF	GO:0005524	ATP binding	IEP	Neighborhood
CC	GO:0005634	nucleus	IEP	Neighborhood
CC	GO:0005643	nuclear pore	IEP	Neighborhood
BP	GO:0006259	DNA metabolic process	IEP	Neighborhood
BP	GO:0006281	DNA repair	IEP	Neighborhood
BP	GO:0006298	mismatch repair	IEP	Neighborhood
BP	GO:0006302	double-strand break repair	IEP	Neighborhood
BP	GO:0006310	DNA recombination	IEP	Neighborhood
BP	GO:0006471	protein ADP-ribosylation	IEP	Neighborhood
BP	GO:0006479	protein methylation	IEP	Neighborhood
BP	GO:0006950	response to stress	IEP	Neighborhood
BP	GO:0006974	cellular response to DNA damage stimulus	IEP	Neighborhood
MF	GO:0008138	protein tyrosine/serine/threonine phosphatase activity	IEP	Neighborhood
MF	GO:0008144	drug binding	IEP	Neighborhood
MF	GO:0008168	methyltransferase activity	IEP	Neighborhood
MF	GO:0008170	N-methyltransferase activity	IEP	Neighborhood
BP	GO:0008213	protein alkylation	IEP	Neighborhood
MF	GO:0008276	protein methyltransferase activity	IEP	Neighborhood
MF	GO:0008757	S-adenosylmethionine-dependent methyltransferase activity	IEP	Neighborhood
MF	GO:0016160	amylase activity	IEP	Neighborhood
MF	GO:0016161	beta-amylase activity	IEP	Neighborhood
MF	GO:0016278	lysine N-methyltransferase activity	IEP	Neighborhood
MF	GO:0016279	protein-lysine N-methyltransferase activity	IEP	Neighborhood
BP	GO:0016571	histone methylation	IEP	Neighborhood
MF	GO:0016741	transferase activity, transferring one-carbon groups	IEP	Neighborhood
MF	GO:0016763	transferase activity, transferring pentosyl groups	IEP	Neighborhood
MF	GO:0017056	structural constituent of nuclear pore	IEP	Neighborhood
MF	GO:0017076	purine nucleotide binding	IEP	Neighborhood
BP	GO:0018022	peptidyl-lysine methylation	IEP	Neighborhood
MF	GO:0018024	histone-lysine N-methyltransferase activity	IEP	Neighborhood
MF	GO:0030554	adenyl nucleotide binding	IEP	Neighborhood
MF	GO:0030983	mismatched DNA binding	IEP	Neighborhood
BP	GO:0032200	telomere organization	IEP	Neighborhood
MF	GO:0032553	ribonucleotide binding	IEP	Neighborhood
MF	GO:0032555	purine ribonucleotide binding	IEP	Neighborhood
MF	GO:0032559	adenyl ribonucleotide binding	IEP	Neighborhood
BP	GO:0033554	cellular response to stress	IEP	Neighborhood
BP	GO:0034968	histone lysine methylation	IEP	Neighborhood
MF	GO:0035639	purine ribonucleoside triphosphate binding	IEP	Neighborhood
MF	GO:0036094	small molecule binding	IEP	Neighborhood
MF	GO:0042054	histone methyltransferase activity	IEP	Neighborhood
MF	GO:0043167	ion binding	IEP	Neighborhood
MF	GO:0043168	anion binding	IEP	Neighborhood
CC	GO:0043226	organelle	IEP	Neighborhood
CC	GO:0043227	membrane-bounded organelle	IEP	Neighborhood
CC	GO:0043229	intracellular organelle	IEP	Neighborhood
CC	GO:0043231	intracellular membrane-bounded organelle	IEP	Neighborhood
BP	GO:0051716	cellular response to stimulus	IEP	Neighborhood
BP	GO:0060249	anatomical structure homeostasis	IEP	Neighborhood
MF	GO:0097367	carbohydrate derivative binding	IEP	Neighborhood
MF	GO:1901265	nucleoside phosphate binding	IEP	Neighborhood

InterPro domains	Description	Start	Stop
IPR000722	RNA_pol_asu	368	521
IPR007081	RNA_pol_Rpb1_5	798	1223
IPR007066	RNA_pol_Rpb1_3	526	670
IPR007080	RNA_pol_Rpb1_1	59	328

External Links

No external refs found!

Solyc01g096390.4.1

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation