1. Home
  2. Species
  3. Solanum lycopersicum
  4. Sequence
  5. Solyc01g096470.3.1

Solyc01g096470.3.1


Description : transcription factor (Trihelix)


Gene families : OG0000562 (Archaeplastida) Phylogenetic Tree(s): OG0000562_tree ,
OG_05_0000321 (LandPlants) Phylogenetic Tree(s): OG_05_0000321_tree ,
OG_06_0005230 (SeedPlants) Phylogenetic Tree(s): OG_06_0005230_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc01g096470.3.1
Cluster HCCA: Cluster_92

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00063p00216020 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.Trihelix... 0.04 Archaeplastida
GSVIVT01036668001 No alias RNA biosynthesis.transcriptional activation.Trihelix... 0.04 Archaeplastida
Gb_02173 No alias transcription factor (Trihelix) 0.03 Archaeplastida
Gb_16931 No alias transcription factor (Trihelix) 0.04 Archaeplastida
Gb_16932 No alias transcription factor (Trihelix) 0.04 Archaeplastida
Gb_19309 No alias transcription factor (Trihelix) 0.06 Archaeplastida
LOC_Os09g38570.1 No alias transcription factor (Trihelix) 0.02 Archaeplastida
MA_10430713g0010 No alias transcription factor (Trihelix) 0.03 Archaeplastida
Pp3c17_19830V3.1 No alias sequence-specific DNA binding transcription factors 0.03 Archaeplastida
Solyc12g010890.2.1 No alias transcription factor (Trihelix) 0.04 Archaeplastida
Zm00001e032412_P001 No alias transcription factor (Trihelix) 0.03 Archaeplastida
Zm00001e040951_P001 No alias transcription factor (Trihelix) 0.04 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
Toggle parental
Type GO Term Name Evidence Source
MF GO:0004842 ubiquitin-protein transferase activity IEP Neighborhood
CC GO:0016021 integral component of membrane IEP Neighborhood
BP GO:0016567 protein ubiquitination IEP Neighborhood
MF GO:0016757 transferase activity, transferring glycosyl groups IEP Neighborhood
MF GO:0019787 ubiquitin-like protein transferase activity IEP Neighborhood
CC GO:0031224 intrinsic component of membrane IEP Neighborhood
BP GO:0032446 protein modification by small protein conjugation IEP Neighborhood

No InterPro domains available for this sequence

No external refs found!