Solyc01g096750.1.1


Description : siRNA-integrating factor (AGO)


Gene families : OG0000124 (Archaeplastida) Phylogenetic Tree(s): OG0000124_tree ,
OG_05_0001060 (LandPlants) Phylogenetic Tree(s): OG_05_0001060_tree ,
OG_06_0001214 (SeedPlants) Phylogenetic Tree(s): OG_06_0001214_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc01g096750.1.1
Cluster HCCA: Cluster_157

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00040p00171340 evm_27.TU.AmTr_v1... Protein argonaute 7 OS=Oryza sativa subsp. japonica 0.02 Archaeplastida
AT1G31290 AGO3 ARGONAUTE 3 0.03 Archaeplastida
AT2G27880 AGO5 Argonaute family protein 0.03 Archaeplastida
AT5G21030 No alias PAZ domain-containing protein / piwi domain-containing protein 0.02 Archaeplastida
AT5G21150 AGO9 Argonaute family protein 0.02 Archaeplastida
GSVIVT01001941001 No alias Chromatin organisation.DNA methylation.canonical... 0.03 Archaeplastida
GSVIVT01012490001 No alias Protein argonaute 7 OS=Arabidopsis thaliana 0.03 Archaeplastida
GSVIVT01012529001 No alias Protein argonaute 7 OS=Oryza sativa subsp. japonica 0.08 Archaeplastida
GSVIVT01018054001 No alias Chromatin organisation.DNA methylation.canonical... 0.03 Archaeplastida
GSVIVT01030512001 No alias Chromatin organisation.DNA methylation.canonical... 0.06 Archaeplastida
GSVIVT01033726001 No alias Chromatin organisation.DNA methylation.canonical... 0.06 Archaeplastida
LOC_Os02g40320.1 No alias Protein argonaute MEL1 OS=Oryza sativa subsp. japonica... 0.02 Archaeplastida
LOC_Os03g33650.1 No alias Protein argonaute 7 OS=Oryza sativa subsp. japonica... 0.06 Archaeplastida
LOC_Os03g58600.1 No alias Protein argonaute MEL1 OS=Oryza sativa subsp. japonica... 0.04 Archaeplastida
LOC_Os06g39640.1 No alias RIS-Complex miRNA recruiting factor (AGO1) 0.02 Archaeplastida
LOC_Os07g09020.1 No alias Protein argonaute 14 OS=Oryza sativa subsp. japonica... 0.05 Archaeplastida
MA_158278g0010 No alias no hits & (original description: none) 0.04 Archaeplastida
MA_18547g0010 No alias Protein argonaute 1A OS=Oryza sativa subsp. japonica... 0.03 Archaeplastida
Mp6g20400.1 No alias siRNA-integrating factor (AGO) 0.04 Archaeplastida
Pp3c18_9600V3.1 No alias Argonaute family protein 0.04 Archaeplastida
Pp3c19_20670V3.1 No alias Argonaute family protein 0.02 Archaeplastida
Zm00001e011432_P001 No alias Protein argonaute MEL1 OS=Oryza sativa subsp. japonica... 0.03 Archaeplastida
Zm00001e017367_P001 No alias siRNA-integrating factor (AGO) 0.03 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
MF GO:0005515 protein binding IEA Interproscan
Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEP Neighborhood
MF GO:0005507 copper ion binding IEP Neighborhood
CC GO:0005634 nucleus IEP Neighborhood
BP GO:0006325 chromatin organization IEP Neighborhood
BP GO:0006479 protein methylation IEP Neighborhood
BP GO:0006813 potassium ion transport IEP Neighborhood
MF GO:0008168 methyltransferase activity IEP Neighborhood
MF GO:0008170 N-methyltransferase activity IEP Neighborhood
BP GO:0008213 protein alkylation IEP Neighborhood
MF GO:0008236 serine-type peptidase activity IEP Neighborhood
MF GO:0008276 protein methyltransferase activity IEP Neighborhood
MF GO:0008324 cation transmembrane transporter activity IEP Neighborhood
MF GO:0008757 S-adenosylmethionine-dependent methyltransferase activity IEP Neighborhood
MF GO:0015079 potassium ion transmembrane transporter activity IEP Neighborhood
MF GO:0015318 inorganic molecular entity transmembrane transporter activity IEP Neighborhood
BP GO:0016043 cellular component organization IEP Neighborhood
MF GO:0016278 lysine N-methyltransferase activity IEP Neighborhood
MF GO:0016279 protein-lysine N-methyltransferase activity IEP Neighborhood
BP GO:0016569 covalent chromatin modification IEP Neighborhood
BP GO:0016570 histone modification IEP Neighborhood
BP GO:0016571 histone methylation IEP Neighborhood
MF GO:0016741 transferase activity, transferring one-carbon groups IEP Neighborhood
MF GO:0017171 serine hydrolase activity IEP Neighborhood
BP GO:0018022 peptidyl-lysine methylation IEP Neighborhood
MF GO:0018024 histone-lysine N-methyltransferase activity IEP Neighborhood
BP GO:0018193 peptidyl-amino acid modification IEP Neighborhood
BP GO:0018205 peptidyl-lysine modification IEP Neighborhood
MF GO:0022890 inorganic cation transmembrane transporter activity IEP Neighborhood
BP GO:0030001 metal ion transport IEP Neighborhood
MF GO:0030599 pectinesterase activity IEP Neighborhood
BP GO:0032259 methylation IEP Neighborhood
BP GO:0034968 histone lysine methylation IEP Neighborhood
MF GO:0042054 histone methyltransferase activity IEP Neighborhood
BP GO:0042545 cell wall modification IEP Neighborhood
CC GO:0043226 organelle IEP Neighborhood
CC GO:0043227 membrane-bounded organelle IEP Neighborhood
CC GO:0043229 intracellular organelle IEP Neighborhood
CC GO:0043231 intracellular membrane-bounded organelle IEP Neighborhood
BP GO:0043414 macromolecule methylation IEP Neighborhood
BP GO:0045229 external encapsulating structure organization IEP Neighborhood
MF GO:0046873 metal ion transmembrane transporter activity IEP Neighborhood
MF GO:0046914 transition metal ion binding IEP Neighborhood
MF GO:0046983 protein dimerization activity IEP Neighborhood
MF GO:0052689 carboxylic ester hydrolase activity IEP Neighborhood
BP GO:0071554 cell wall organization or biogenesis IEP Neighborhood
BP GO:0071555 cell wall organization IEP Neighborhood
BP GO:0071804 cellular potassium ion transport IEP Neighborhood
BP GO:0071805 potassium ion transmembrane transport IEP Neighborhood
BP GO:0071840 cellular component organization or biogenesis IEP Neighborhood
InterPro domains Description Start Stop
IPR032474 Argonaute_N 28 186
IPR003100 PAZ_dom 252 380
IPR014811 ArgoL1 198 246
IPR003165 Piwi 535 842
IPR032472 ArgoL2 390 435
No external refs found!