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  5. Solyc01g096950.4.1

Solyc01g096950.4.1


Description : component RBL of COMPASS histone trimethylation complex


Gene families : OG0005015 (Archaeplastida) Phylogenetic Tree(s): OG0005015_tree ,
OG_05_0005966 (LandPlants) Phylogenetic Tree(s): OG_05_0005966_tree ,
OG_06_0006072 (SeedPlants) Phylogenetic Tree(s): OG_06_0006072_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc01g096950.4.1
Cluster HCCA: Cluster_173

Target Alias Description ECC score Gene Family Method Actions
AT3G21060 No alias Transducin/WD40 repeat-like superfamily protein 0.04 Archaeplastida
Gb_30454 No alias component RBL of COMPASS histone trimethylation complex 0.04 Archaeplastida
LOC_Os03g10990.1 No alias component RBL of COMPASS histone trimethylation complex 0.02 Archaeplastida
MA_339968g0010 No alias no hits & (original description: none) 0.04 Archaeplastida
MA_826527g0010 No alias component RBL of COMPASS histone trimethylation complex 0.02 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0000413 protein peptidyl-prolyl isomerization IEP Neighborhood
MF GO:0001882 nucleoside binding IEP Neighborhood
MF GO:0001883 purine nucleoside binding IEP Neighborhood
MF GO:0003676 nucleic acid binding IEP Neighborhood
MF GO:0003723 RNA binding IEP Neighborhood
MF GO:0003755 peptidyl-prolyl cis-trans isomerase activity IEP Neighborhood
MF GO:0003924 GTPase activity IEP Neighborhood
MF GO:0005525 GTP binding IEP Neighborhood
BP GO:0006364 rRNA processing IEP Neighborhood
BP GO:0006396 RNA processing IEP Neighborhood
MF GO:0008641 ubiquitin-like modifier activating enzyme activity IEP Neighborhood
BP GO:0016070 RNA metabolic process IEP Neighborhood
BP GO:0016072 rRNA metabolic process IEP Neighborhood
MF GO:0016779 nucleotidyltransferase activity IEP Neighborhood
MF GO:0016817 hydrolase activity, acting on acid anhydrides IEP Neighborhood
MF GO:0016853 isomerase activity IEP Neighborhood
MF GO:0016859 cis-trans isomerase activity IEP Neighborhood
MF GO:0016877 ligase activity, forming carbon-sulfur bonds IEP Neighborhood
BP GO:0018208 peptidyl-proline modification IEP Neighborhood
MF GO:0019001 guanyl nucleotide binding IEP Neighborhood
CC GO:0030684 preribosome IEP Neighborhood
CC GO:0032040 small-subunit processome IEP Neighborhood
MF GO:0032549 ribonucleoside binding IEP Neighborhood
MF GO:0032550 purine ribonucleoside binding IEP Neighborhood
MF GO:0032561 guanyl ribonucleotide binding IEP Neighborhood
InterPro domains Description Start Stop
IPR001680 WD40_repeat 26 52
IPR001680 WD40_repeat 70 96
IPR001680 WD40_repeat 289 324
No external refs found!