Solyc01g097110.2.1

Description : meiotic crossover formation factor (FANCD2)

Gene families : OG0003318 (Archaeplastida) Phylogenetic Tree(s): OG0003318_tree ,
OG_05_0007099 (LandPlants) Phylogenetic Tree(s): OG_05_0007099_tree ,
OG_06_0006475 (SeedPlants) Phylogenetic Tree(s): OG_06_0006475_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Solyc01g097110.2.1
Cluster	HCCA: Cluster_35

Target	Alias	Description	ECC score	Gene Family Method
Cre10.g453650	No alias	No description available	0.05	Archaeplastida
Gb_40796	No alias	no hits & (original description: none)	0.02	Archaeplastida
Gb_40797	No alias	no hits & (original description: none)	0.06	Archaeplastida
Gb_40798	No alias	meiotic crossover formation factor (FANCD2)	0.03	Archaeplastida
Gb_40799	No alias	meiotic crossover formation factor (FANCD2)	0.06	Archaeplastida
Mp1g20410.1	No alias	meiotic crossover formation factor (FANCD2)	0.04	Archaeplastida
Zm00001e011509_P002	No alias	meiotic crossover formation factor (FANCD2)	0.03	Archaeplastida

Type	GO Term	Name	Evidence	Source
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006259	DNA metabolic process	None	Extended
BP	GO:0006281	DNA repair	IEA	Interproscan
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0006950	response to stress	None	Extended
BP	GO:0006974	cellular response to DNA damage stimulus	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0033554	cellular response to stress	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0050896	response to stimulus	None	Extended
BP	GO:0051716	cellular response to stimulus	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0003678	DNA helicase activity	IEP	Neighborhood
MF	GO:0003774	motor activity	IEP	Neighborhood
MF	GO:0003777	microtubule motor activity	IEP	Neighborhood
MF	GO:0004386	helicase activity	IEP	Neighborhood
BP	GO:0006888	ER to Golgi vesicle-mediated transport	IEP	Neighborhood
BP	GO:0006928	movement of cell or subcellular component	IEP	Neighborhood
BP	GO:0007017	microtubule-based process	IEP	Neighborhood
BP	GO:0007018	microtubule-based movement	IEP	Neighborhood
MF	GO:0008017	microtubule binding	IEP	Neighborhood
MF	GO:0008270	zinc ion binding	IEP	Neighborhood
MF	GO:0008641	ubiquitin-like modifier activating enzyme activity	IEP	Neighborhood
MF	GO:0015631	tubulin binding	IEP	Neighborhood
MF	GO:0016462	pyrophosphatase activity	IEP	Neighborhood
MF	GO:0016817	hydrolase activity, acting on acid anhydrides	IEP	Neighborhood
MF	GO:0016818	hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides	IEP	Neighborhood
MF	GO:0016877	ligase activity, forming carbon-sulfur bonds	IEP	Neighborhood
MF	GO:0017111	nucleoside-triphosphatase activity	IEP	Neighborhood
CC	GO:0030117	membrane coat	IEP	Neighborhood
CC	GO:0030120	vesicle coat	IEP	Neighborhood
CC	GO:0030127	COPII vesicle coat	IEP	Neighborhood
CC	GO:0030915	Smc5-Smc6 complex	IEP	Neighborhood
CC	GO:0044422	organelle part	IEP	Neighborhood
CC	GO:0044433	cytoplasmic vesicle part	IEP	Neighborhood
CC	GO:0044446	intracellular organelle part	IEP	Neighborhood
BP	GO:0048193	Golgi vesicle transport	IEP	Neighborhood
CC	GO:0106068	SUMO ligase complex	IEP	Neighborhood
MF	GO:0140097	catalytic activity, acting on DNA	IEP	Neighborhood
CC	GO:1990234	transferase complex	IEP	Neighborhood

InterPro domains	Description	Start	Stop
IPR029448	FANCD2	1214	1481
IPR029448	FANCD2	107	894

External Links

No external refs found!

Solyc01g097110.2.1

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation