Solyc01g098880.3.1


Description : serine-tRNA ligase


Gene families : OG0004095 (Archaeplastida) Phylogenetic Tree(s): OG0004095_tree ,
OG_05_0004504 (LandPlants) Phylogenetic Tree(s): OG_05_0004504_tree ,
OG_06_0005298 (SeedPlants) Phylogenetic Tree(s): OG_06_0005298_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc01g098880.3.1
Cluster HCCA: Cluster_105

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00057p00038540 evm_27.TU.AmTr_v1... Protein biosynthesis.aminoacyl-tRNA synthetase... 0.03 Archaeplastida
AT5G27470 No alias seryl-tRNA synthetase / serine--tRNA ligase 0.08 Archaeplastida
Cpa|evm.model.tig00020610.57 No alias Protein biosynthesis.aminoacyl-tRNA synthetase... 0.04 Archaeplastida
Cre03.g189400 No alias Protein biosynthesis.aminoacyl-tRNA synthetase... 0.05 Archaeplastida
GSVIVT01000041001 No alias Protein biosynthesis.aminoacyl-tRNA synthetase... 0.04 Archaeplastida
LOC_Os01g37837.1 No alias serine-tRNA ligase 0.05 Archaeplastida
MA_9118765g0010 No alias no hits & (original description: none) 0.05 Archaeplastida
Mp8g15990.1 No alias serine-tRNA ligase 0.08 Archaeplastida
Pp3c13_16820V3.1 No alias seryl-tRNA synthetase / serine--tRNA ligase 0.12 Archaeplastida
Smo99251 No alias Protein biosynthesis.aminoacyl-tRNA synthetase... 0.02 Archaeplastida
Zm00001e038788_P002 No alias serine-tRNA ligase 0.14 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEA Interproscan
MF GO:0004812 aminoacyl-tRNA ligase activity IEA Interproscan
MF GO:0005524 ATP binding IEA Interproscan
BP GO:0006418 tRNA aminoacylation for protein translation IEA Interproscan
Type GO Term Name Evidence Source
MF GO:0000049 tRNA binding IEP Neighborhood
BP GO:0000154 rRNA modification IEP Neighborhood
BP GO:0001510 RNA methylation IEP Neighborhood
MF GO:0001882 nucleoside binding IEP Neighborhood
MF GO:0001883 purine nucleoside binding IEP Neighborhood
MF GO:0003676 nucleic acid binding IEP Neighborhood
MF GO:0003723 RNA binding IEP Neighborhood
MF GO:0003735 structural constituent of ribosome IEP Neighborhood
MF GO:0003743 translation initiation factor activity IEP Neighborhood
MF GO:0003746 translation elongation factor activity IEP Neighborhood
MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity IEP Neighborhood
MF GO:0003924 GTPase activity IEP Neighborhood
MF GO:0004176 ATP-dependent peptidase activity IEP Neighborhood
MF GO:0004814 arginine-tRNA ligase activity IEP Neighborhood
MF GO:0004819 glutamine-tRNA ligase activity IEP Neighborhood
MF GO:0005047 signal recognition particle binding IEP Neighborhood
MF GO:0005048 signal sequence binding IEP Neighborhood
MF GO:0005198 structural molecule activity IEP Neighborhood
MF GO:0005525 GTP binding IEP Neighborhood
CC GO:0005575 cellular_component IEP Neighborhood
CC GO:0005737 cytoplasm IEP Neighborhood
CC GO:0005741 mitochondrial outer membrane IEP Neighborhood
CC GO:0005744 TIM23 mitochondrial import inner membrane translocase complex IEP Neighborhood
CC GO:0005786 signal recognition particle, endoplasmic reticulum targeting IEP Neighborhood
CC GO:0005840 ribosome IEP Neighborhood
CC GO:0005852 eukaryotic translation initiation factor 3 complex IEP Neighborhood
BP GO:0006351 transcription, DNA-templated IEP Neighborhood
BP GO:0006364 rRNA processing IEP Neighborhood
BP GO:0006396 RNA processing IEP Neighborhood
BP GO:0006400 tRNA modification IEP Neighborhood
BP GO:0006412 translation IEP Neighborhood
BP GO:0006414 translational elongation IEP Neighborhood
BP GO:0006420 arginyl-tRNA aminoacylation IEP Neighborhood
BP GO:0006425 glutaminyl-tRNA aminoacylation IEP Neighborhood
BP GO:0006518 peptide metabolic process IEP Neighborhood
BP GO:0006605 protein targeting IEP Neighborhood
BP GO:0006612 protein targeting to membrane IEP Neighborhood
BP GO:0006613 cotranslational protein targeting to membrane IEP Neighborhood
BP GO:0006614 SRP-dependent cotranslational protein targeting to membrane IEP Neighborhood
BP GO:0006839 mitochondrial transport IEP Neighborhood
BP GO:0006886 intracellular protein transport IEP Neighborhood
MF GO:0008097 5S rRNA binding IEP Neighborhood
MF GO:0008135 translation factor activity, RNA binding IEP Neighborhood
MF GO:0008173 RNA methyltransferase activity IEP Neighborhood
MF GO:0008312 7S RNA binding IEP Neighborhood
MF GO:0008649 rRNA methyltransferase activity IEP Neighborhood
BP GO:0009058 biosynthetic process IEP Neighborhood
BP GO:0009059 macromolecule biosynthetic process IEP Neighborhood
BP GO:0009451 RNA modification IEP Neighborhood
BP GO:0016072 rRNA metabolic process IEP Neighborhood
MF GO:0016435 rRNA (guanine) methyltransferase activity IEP Neighborhood
MF GO:0016462 pyrophosphatase activity IEP Neighborhood
MF GO:0016779 nucleotidyltransferase activity IEP Neighborhood
MF GO:0016817 hydrolase activity, acting on acid anhydrides IEP Neighborhood
MF GO:0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides IEP Neighborhood
BP GO:0017038 protein import IEP Neighborhood
MF GO:0017111 nucleoside-triphosphatase activity IEP Neighborhood
MF GO:0019001 guanyl nucleotide binding IEP Neighborhood
MF GO:0019843 rRNA binding IEP Neighborhood
CC GO:0019867 outer membrane IEP Neighborhood
BP GO:0022613 ribonucleoprotein complex biogenesis IEP Neighborhood
BP GO:0030150 protein import into mitochondrial matrix IEP Neighborhood
BP GO:0030488 tRNA methylation IEP Neighborhood
CC GO:0030684 preribosome IEP Neighborhood
MF GO:0030942 endoplasmic reticulum signal peptide binding IEP Neighborhood
BP GO:0031167 rRNA methylation IEP Neighborhood
CC GO:0031515 tRNA (m1A) methyltransferase complex IEP Neighborhood
CC GO:0031968 organelle outer membrane IEP Neighborhood
CC GO:0032040 small-subunit processome IEP Neighborhood
BP GO:0032259 methylation IEP Neighborhood
MF GO:0032549 ribonucleoside binding IEP Neighborhood
MF GO:0032550 purine ribonucleoside binding IEP Neighborhood
MF GO:0032561 guanyl ribonucleotide binding IEP Neighborhood
CC GO:0032991 protein-containing complex IEP Neighborhood
BP GO:0033365 protein localization to organelle IEP Neighborhood
MF GO:0034062 5'-3' RNA polymerase activity IEP Neighborhood
BP GO:0034470 ncRNA processing IEP Neighborhood
BP GO:0034613 cellular protein localization IEP Neighborhood
BP GO:0034645 cellular macromolecule biosynthetic process IEP Neighborhood
CC GO:0034708 methyltransferase complex IEP Neighborhood
BP GO:0036265 RNA (guanine-N7)-methylation IEP Neighborhood
BP GO:0042254 ribosome biogenesis IEP Neighborhood
MF GO:0042277 peptide binding IEP Neighborhood
MF GO:0043021 ribonucleoprotein complex binding IEP Neighborhood
BP GO:0043043 peptide biosynthetic process IEP Neighborhood
CC GO:0043226 organelle IEP Neighborhood
CC GO:0043228 non-membrane-bounded organelle IEP Neighborhood
CC GO:0043229 intracellular organelle IEP Neighborhood
CC GO:0043232 intracellular non-membrane-bounded organelle IEP Neighborhood
BP GO:0043414 macromolecule methylation IEP Neighborhood
CC GO:0043527 tRNA methyltransferase complex IEP Neighborhood
BP GO:0043603 cellular amide metabolic process IEP Neighborhood
BP GO:0043604 amide biosynthetic process IEP Neighborhood
BP GO:0044085 cellular component biogenesis IEP Neighborhood
BP GO:0044249 cellular biosynthetic process IEP Neighborhood
BP GO:0044260 cellular macromolecule metabolic process IEP Neighborhood
BP GO:0044271 cellular nitrogen compound biosynthetic process IEP Neighborhood
CC GO:0044424 intracellular part IEP Neighborhood
CC GO:0044429 mitochondrial part IEP Neighborhood
CC GO:0044444 cytoplasmic part IEP Neighborhood
CC GO:0044464 cell part IEP Neighborhood
BP GO:0044743 protein transmembrane import into intracellular organelle IEP Neighborhood
BP GO:0045047 protein targeting to ER IEP Neighborhood
BP GO:0046907 intracellular transport IEP Neighborhood
CC GO:0048500 signal recognition particle IEP Neighborhood
BP GO:0051649 establishment of localization in cell IEP Neighborhood
BP GO:0065002 intracellular protein transmembrane transport IEP Neighborhood
BP GO:0070475 rRNA base methylation IEP Neighborhood
BP GO:0070476 rRNA (guanine-N7)-methylation IEP Neighborhood
MF GO:0070569 uridylyltransferase activity IEP Neighborhood
BP GO:0070585 protein localization to mitochondrion IEP Neighborhood
BP GO:0070727 cellular macromolecule localization IEP Neighborhood
BP GO:0070972 protein localization to endoplasmic reticulum IEP Neighborhood
BP GO:0071806 protein transmembrane transport IEP Neighborhood
BP GO:0072594 establishment of protein localization to organelle IEP Neighborhood
BP GO:0072599 establishment of protein localization to endoplasmic reticulum IEP Neighborhood
BP GO:0072655 establishment of protein localization to mitochondrion IEP Neighborhood
BP GO:0072657 protein localization to membrane IEP Neighborhood
BP GO:0090150 establishment of protein localization to membrane IEP Neighborhood
BP GO:0097659 nucleic acid-templated transcription IEP Neighborhood
MF GO:0097747 RNA polymerase activity IEP Neighborhood
CC GO:0098588 bounding membrane of organelle IEP Neighborhood
CC GO:0098800 inner mitochondrial membrane protein complex IEP Neighborhood
CC GO:0098805 whole membrane IEP Neighborhood
MF GO:0140102 catalytic activity, acting on a rRNA IEP Neighborhood
BP GO:1901566 organonitrogen compound biosynthetic process IEP Neighborhood
BP GO:1901576 organic substance biosynthetic process IEP Neighborhood
BP GO:1990542 mitochondrial transmembrane transport IEP Neighborhood
CC GO:1990904 ribonucleoprotein complex IEP Neighborhood
InterPro domains Description Start Stop
IPR002314 aa-tRNA-synt_IIb 221 408
IPR015866 Ser-tRNA-synth_1_N 1 112
No external refs found!