Solyc01g098940.3.1

Description : pectin methylesterase

Gene families : OG0000046 (Archaeplastida) Phylogenetic Tree(s): OG0000046_tree ,
OG_05_0000020 (LandPlants) Phylogenetic Tree(s): OG_05_0000020_tree ,
OG_06_0000014 (SeedPlants) Phylogenetic Tree(s): OG_06_0000014_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Solyc01g098940.3.1
Cluster	HCCA: Cluster_184

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00010p00161740	evm_27.TU.AmTr_v1...	Cell wall.pectin.homogalacturonan.modification and...	0.02	Archaeplastida
AMTR_s00040p00233690	evm_27.TU.AmTr_v1...	Cell wall.pectin.homogalacturonan.modification and...	0.03	Archaeplastida
AMTR_s00105p00078750	evm_27.TU.AmTr_v1...	Cell wall.pectin.homogalacturonan.modification and...	0.03	Archaeplastida
AT1G53830	ATPME2, PME2	pectin methylesterase 2	0.05	Archaeplastida
AT2G26440	No alias	Plant invertase/pectin methylesterase inhibitor superfamily	0.01	Archaeplastida
AT3G49220	No alias	Plant invertase/pectin methylesterase inhibitor superfamily	0.04	Archaeplastida
AT5G04970	No alias	Plant invertase/pectin methylesterase inhibitor superfamily	0.03	Archaeplastida
GSVIVT01014999001	No alias	Cell wall.pectin.homogalacturonan.modification and...	0.02	Archaeplastida
GSVIVT01027652001	No alias	Cell wall.pectin.homogalacturonan.modification and...	0.04	Archaeplastida
GSVIVT01038546001	No alias	Cell wall.pectin.homogalacturonan.modification and...	0.03	Archaeplastida
Gb_01422	No alias	pectin methylesterase	0.02	Archaeplastida
Gb_21388	No alias	pectin methylesterase	0.03	Archaeplastida
LOC_Os01g65790.1	No alias	pectin methylesterase	0.02	Archaeplastida
LOC_Os02g54190.1	No alias	pectin methylesterase	0.03	Archaeplastida
LOC_Os11g08750.1	No alias	pectin methylesterase	0.03	Archaeplastida
MA_10377619g0010	No alias	no hits & (original description: none)	0.03	Archaeplastida
MA_130858g0010	No alias	pectin methylesterase	0.03	Archaeplastida
MA_158002g0020	No alias	pectin methylesterase	0.02	Archaeplastida
MA_2017g0010	No alias	pectin methylesterase	0.03	Archaeplastida
MA_51464g0010	No alias	pectin methylesterase	0.02	Archaeplastida
MA_648837g0010	No alias	pectin methylesterase	0.03	Archaeplastida
MA_931259g0010	No alias	pectin methylesterase	0.03	Archaeplastida
MA_96515g0010	No alias	pectin methylesterase	0.02	Archaeplastida
Pp3c21_11740V3.1	No alias	Plant invertase/pectin methylesterase inhibitor superfamily	0.04	Archaeplastida
Smo420760	No alias	Cell wall.pectin.homogalacturonan.modification and...	0.03	Archaeplastida
Solyc01g057220.3.1	No alias	pectin methylesterase	0.02	Archaeplastida

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0004857	enzyme inhibitor activity	IEA	Interproscan
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016043	cellular component organization	None	Extended
MF	GO:0016787	hydrolase activity	None	Extended
MF	GO:0016788	hydrolase activity, acting on ester bonds	None	Extended
MF	GO:0030234	enzyme regulator activity	None	Extended
MF	GO:0030599	pectinesterase activity	IEA	Interproscan
BP	GO:0042545	cell wall modification	IEA	Interproscan
BP	GO:0045229	external encapsulating structure organization	None	Extended
MF	GO:0052689	carboxylic ester hydrolase activity	None	Extended
BP	GO:0071554	cell wall organization or biogenesis	None	Extended
BP	GO:0071555	cell wall organization	None	Extended
BP	GO:0071840	cellular component organization or biogenesis	None	Extended
MF	GO:0098772	molecular function regulator	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0004129	cytochrome-c oxidase activity	IEP	Neighborhood
MF	GO:0004553	hydrolase activity, hydrolyzing O-glycosyl compounds	IEP	Neighborhood
BP	GO:0005975	carbohydrate metabolic process	IEP	Neighborhood
MF	GO:0008194	UDP-glycosyltransferase activity	IEP	Neighborhood
MF	GO:0015002	heme-copper terminal oxidase activity	IEP	Neighborhood
BP	GO:0016042	lipid catabolic process	IEP	Neighborhood
MF	GO:0016151	nickel cation binding	IEP	Neighborhood
MF	GO:0016491	oxidoreductase activity	IEP	Neighborhood
MF	GO:0016675	oxidoreductase activity, acting on a heme group of donors	IEP	Neighborhood
MF	GO:0016676	oxidoreductase activity, acting on a heme group of donors, oxygen as acceptor	IEP	Neighborhood
MF	GO:0016757	transferase activity, transferring glycosyl groups	IEP	Neighborhood
MF	GO:0016798	hydrolase activity, acting on glycosyl bonds	IEP	Neighborhood
MF	GO:0016846	carbon-sulfur lyase activity	IEP	Neighborhood
BP	GO:0022618	ribonucleoprotein complex assembly	IEP	Neighborhood
MF	GO:0031625	ubiquitin protein ligase binding	IEP	Neighborhood
BP	GO:0042255	ribosome assembly	IEP	Neighborhood
BP	GO:0042256	mature ribosome assembly	IEP	Neighborhood
MF	GO:0043021	ribonucleoprotein complex binding	IEP	Neighborhood
MF	GO:0043022	ribosome binding	IEP	Neighborhood
MF	GO:0044389	ubiquitin-like protein ligase binding	IEP	Neighborhood
BP	GO:0051603	proteolysis involved in cellular protein catabolic process	IEP	Neighborhood
BP	GO:0070925	organelle assembly	IEP	Neighborhood
BP	GO:0071826	ribonucleoprotein complex subunit organization	IEP	Neighborhood

InterPro domains	Description	Start	Stop
IPR006501	Pectinesterase_inhib_dom	25	177
IPR000070	Pectinesterase_cat	248	546

External Links

No external refs found!

Solyc01g098940.3.1

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation