Solyc01g099410.3.1

Description : histone (H2A)

Gene families : OG0000174 (Archaeplastida) Phylogenetic Tree(s): OG0000174_tree ,
OG_05_0000204 (LandPlants) Phylogenetic Tree(s): OG_05_0000204_tree ,
OG_06_0000166 (SeedPlants) Phylogenetic Tree(s): OG_06_0000166_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Solyc01g099410.3.1
Cluster	HCCA: Cluster_120

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00057p00215390	evm_27.TU.AmTr_v1...	Chromatin organisation.histones.H2A-type histone	0.08	Archaeplastida
AMTR_s00058p00158560	evm_27.TU.AmTr_v1...	Chromatin organisation.histones.H2A-type histone	0.1	Archaeplastida
AMTR_s00115p00128810	evm_27.TU.AmTr_v1...	Chromatin organisation.histones.H2A-type histone	0.03	Archaeplastida
AT1G08880	GAMMA-H2AX,...	Histone superfamily protein	0.06	Archaeplastida
AT1G51060	HTA10	histone H2A 10	0.12	Archaeplastida
AT1G54690	GAMMA-H2AX,...	gamma histone variant H2AX	0.05	Archaeplastida
AT3G20670	HTA13	histone H2A 13	0.11	Archaeplastida
AT4G27230	HTA2	histone H2A 2	0.11	Archaeplastida
AT5G27670	HTA7	histone H2A 7	0.06	Archaeplastida
AT5G59870	HTA6	histone H2A 6	0.13	Archaeplastida
Cre06.g264750	No alias	Chromatin organisation.histones.H2A-type histone	0.05	Archaeplastida
Cre06.g264950	No alias	Chromatin organisation.histones.H2A-type histone	0.05	Archaeplastida
Cre06.g265350	No alias	Chromatin organisation.histones.H2A-type histone	0.05	Archaeplastida
Cre06.g266700	No alias	Chromatin organisation.histones.H2A-type histone	0.05	Archaeplastida
Cre06.g268050	No alias	Chromatin organisation.histones.H2A-type histone	0.05	Archaeplastida
Cre06.g268300	No alias	Chromatin organisation.histones.H2A-type histone	0.05	Archaeplastida
Cre06.g271350	No alias	Chromatin organisation.histones.H2A-type histone	0.05	Archaeplastida
Cre06.g273900	No alias	Chromatin organisation.histones.H2A-type histone	0.05	Archaeplastida
Cre06.g274200	No alias	Chromatin organisation.histones.H2A-type histone	0.05	Archaeplastida
Cre06.g274800	No alias	Chromatin organisation.histones.H2A-type histone	0.05	Archaeplastida
Cre06.g275850	No alias	Chromatin organisation.histones.H2A-type histone	0.05	Archaeplastida
Cre06.g276500	No alias	Chromatin organisation.histones.H2A-type histone	0.05	Archaeplastida
Cre06.g276950	No alias	Chromatin organisation.histones.H2A-type histone	0.05	Archaeplastida
Cre12.g504500	No alias	Chromatin organisation.histones.H2A-type histone	0.05	Archaeplastida
Cre12.g504750	No alias	Chromatin organisation.histones.H2A-type histone	0.05	Archaeplastida
Cre12.g505550	No alias	Chromatin organisation.histones.H2A-type histone	0.05	Archaeplastida
Cre12.g506250	No alias	Chromatin organisation.histones.H2A-type histone	0.05	Archaeplastida
Cre13.g570100	No alias	Chromatin organisation.histones.H2A-type histone	0.05	Archaeplastida
Cre13.g590800	No alias	Chromatin organisation.histones.H2A-type histone	0.02	Archaeplastida
Cre13.g591150	No alias	Chromatin organisation.histones.H2A-type histone	0.02	Archaeplastida
Cre17.g708550	No alias	Chromatin organisation.histones.H2A-type histone	0.05	Archaeplastida
Cre17.g709200	No alias	Chromatin organisation.histones.H2A-type histone	0.05	Archaeplastida
Cre17.g710400	No alias	Chromatin organisation.histones.H2A-type histone	0.05	Archaeplastida
Cre17.g711700	No alias	Chromatin organisation.histones.H2A-type histone	0.05	Archaeplastida
Cre17.g713400	No alias	Chromatin organisation.histones.H2A-type histone	0.05	Archaeplastida
Cre17.g714500	No alias	Chromatin organisation.histones.H2A-type histone	0.06	Archaeplastida
GSVIVT01002735001	No alias	Chromatin organisation.histones.H2A-type histone	0.03	Archaeplastida
GSVIVT01002746001	No alias	Chromatin organisation.histones.H2A-type histone	0.03	Archaeplastida
GSVIVT01011034001	No alias	Chromatin organisation.histones.H2A-type histone	0.11	Archaeplastida
GSVIVT01014580001	No alias	Chromatin organisation.histones.H2A-type histone	0.04	Archaeplastida
GSVIVT01031123001	No alias	Chromatin organisation.histones.H2A-type histone	0.03	Archaeplastida
Gb_06384	No alias	histone (H2A)	0.04	Archaeplastida
Gb_07070	No alias	histone (H2A)	0.05	Archaeplastida
Gb_12570	No alias	histone (H2A)	0.03	Archaeplastida
Gb_25326	No alias	histone (H2A)	0.12	Archaeplastida
Gb_39944	No alias	histone (H2A)	0.05	Archaeplastida
LOC_Os01g31800.1	No alias	histone (H2A)	0.07	Archaeplastida
LOC_Os03g17100.1	No alias	histone (H2A)	0.14	Archaeplastida
LOC_Os05g02300.1	No alias	histone (H2A)	0.09	Archaeplastida
LOC_Os07g36130.1	No alias	histone (H2A)	0.06	Archaeplastida
LOC_Os07g36140.1	No alias	histone (H2A)	0.07	Archaeplastida
LOC_Os08g33100.1	No alias	histone (H2A)	0.11	Archaeplastida
LOC_Os12g25120.1	No alias	histone (H2A)	0.03	Archaeplastida
LOC_Os12g34510.1	No alias	histone (H2A)	0.03	Archaeplastida
MA_10425800g0010	No alias	histone (H2A)	0.04	Archaeplastida
MA_10426943g0010	No alias	histone (H2A)	0.04	Archaeplastida
MA_169054g0020	No alias	histone (H2A)	0.04	Archaeplastida
MA_213048g0010	No alias	histone (H2A)	0.06	Archaeplastida
MA_22203g0020	No alias	histone (H2A)	0.03	Archaeplastida
MA_427046g0010	No alias	histone (H2A)	0.03	Archaeplastida
MA_74667g0010	No alias	histone (H2A)	0.06	Archaeplastida
MA_94328g0020	No alias	histone (H2A)	0.06	Archaeplastida
MA_962778g0010	No alias	histone (H2A)	0.09	Archaeplastida
Mp2g00760.1	No alias	histone (H2A)	0.04	Archaeplastida
Mp3g00840.1	No alias	histone (H2A)	0.04	Archaeplastida
Mp3g02370.1	No alias	histone (H2A)	0.03	Archaeplastida
Pp3c5_1800V3.1	No alias	histone H2A 10	0.02	Archaeplastida
Pp3c6_29410V3.1	No alias	histone H2A 10	0.03	Archaeplastida
Smo166626	No alias	Chromatin organisation.histones.H2A-type histone	0.03	Archaeplastida
Smo170948	No alias	Chromatin organisation.histones.H2A-type histone	0.03	Archaeplastida
Smo73637	No alias	Chromatin organisation.histones.H2A-type histone	0.03	Archaeplastida
Smo76653	No alias	Chromatin organisation.histones.H2A-type histone	0.02	Archaeplastida
Zm00001e010232_P001	No alias	histone (H2A)	0.07	Archaeplastida
Zm00001e010515_P001	No alias	histone (H2A)	0.09	Archaeplastida
Zm00001e011643_P001	No alias	histone (H2A)	0.11	Archaeplastida
Zm00001e012144_P001	No alias	histone (H2A)	0.03	Archaeplastida
Zm00001e020483_P001	No alias	histone (H2A)	0.11	Archaeplastida
Zm00001e033014_P001	No alias	histone (H2A)	0.11	Archaeplastida
Zm00001e034815_P001	No alias	histone (H2A)	0.1	Archaeplastida
Zm00001e035183_P002	No alias	histone (H2A)	0.07	Archaeplastida
Zm00001e038465_P002	No alias	histone (H2A)	0.05	Archaeplastida
Zm00001e039735_P001	No alias	histone (H2A)	0.11	Archaeplastida

Type	GO Term	Name	Evidence	Source
CC	GO:0000786	nucleosome	IEA	Interproscan
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0032991	protein-containing complex	None	Extended
CC	GO:0032993	protein-DNA complex	None	Extended
CC	GO:0044422	organelle part	None	Extended
CC	GO:0044424	intracellular part	None	Extended
CC	GO:0044427	chromosomal part	None	Extended
CC	GO:0044446	intracellular organelle part	None	Extended
CC	GO:0044464	cell part	None	Extended
CC	GO:0044815	DNA packaging complex	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

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Type	GO Term	Name	Evidence	Source
BP	GO:0000075	cell cycle checkpoint	IEP	Neighborhood
BP	GO:0000077	DNA damage checkpoint	IEP	Neighborhood
BP	GO:0006275	regulation of DNA replication	IEP	Neighborhood
BP	GO:0006479	protein methylation	IEP	Neighborhood
BP	GO:0008213	protein alkylation	IEP	Neighborhood
MF	GO:0008270	zinc ion binding	IEP	Neighborhood
BP	GO:0009116	nucleoside metabolic process	IEP	Neighborhood
BP	GO:0016571	histone methylation	IEP	Neighborhood
BP	GO:0018022	peptidyl-lysine methylation	IEP	Neighborhood
BP	GO:0031570	DNA integrity checkpoint	IEP	Neighborhood
CC	GO:0033643	host cell part	IEP	Neighborhood
CC	GO:0033646	host intracellular part	IEP	Neighborhood
CC	GO:0033647	host intracellular organelle	IEP	Neighborhood
CC	GO:0033648	host intracellular membrane-bounded organelle	IEP	Neighborhood
BP	GO:0034968	histone lysine methylation	IEP	Neighborhood
CC	GO:0042025	host cell nucleus	IEP	Neighborhood
MF	GO:0042393	histone binding	IEP	Neighborhood
CC	GO:0044217	other organism part	IEP	Neighborhood
BP	GO:0045786	negative regulation of cell cycle	IEP	Neighborhood
BP	GO:0048523	negative regulation of cellular process	IEP	Neighborhood
BP	GO:0051052	regulation of DNA metabolic process	IEP	Neighborhood
BP	GO:0051726	regulation of cell cycle	IEP	Neighborhood
BP	GO:1901657	glycosyl compound metabolic process	IEP	Neighborhood

InterPro domains	Description	Start	Stop
IPR032454	Histone_H2A_C	98	128
IPR007125	Histone_H2A/H2B/H3	18	95

External Links

No external refs found!

Solyc01g099410.3.1

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation