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  5. Solyc01g100580.3.1

Solyc01g100580.3.1


Description : Pentatricopeptide repeat-containing protein At4g01990, mitochondrial OS=Arabidopsis thaliana (sp|q93wc5|pp300_arath : 264.0)


Gene families : OG0000235 (Archaeplastida) Phylogenetic Tree(s): OG0000235_tree ,
OG_05_0000298 (LandPlants) Phylogenetic Tree(s): OG_05_0000298_tree ,
OG_06_0031564 (SeedPlants) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc01g100580.3.1
Cluster HCCA: Cluster_105

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00009p00264580 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At2g20710,... 0.02 Archaeplastida
AT1G02370 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.06 Archaeplastida
AT1G60770 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 Archaeplastida
AT1G80270 PPR596 PENTATRICOPEPTIDE REPEAT 596 0.05 Archaeplastida
AT4G01990 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.05 Archaeplastida
AT4G02820 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.04 Archaeplastida
AT5G09450 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.02 Archaeplastida
GSVIVT01002065001 No alias Pentatricopeptide repeat-containing protein At4g21705,... 0.03 Archaeplastida
GSVIVT01006654001 No alias Pentatricopeptide repeat-containing protein At1g60770... 0.04 Archaeplastida
GSVIVT01033642001 No alias Pentatricopeptide repeat-containing protein At1g80270,... 0.09 Archaeplastida
Gb_14576 No alias Pentatricopeptide repeat-containing protein At1g60770... 0.03 Archaeplastida
Gb_27873 No alias RNA editing factor (POCO) 0.03 Archaeplastida
Gb_38114 No alias RNA editing factor (POCO) 0.03 Archaeplastida
LOC_Os01g17320.1 No alias RNA editing factor (POCO) 0.02 Archaeplastida
LOC_Os01g19490.1 No alias Pentatricopeptide repeat-containing protein At4g01990,... 0.03 Archaeplastida
LOC_Os02g55310.1 No alias Pentatricopeptide repeat-containing protein At5g27460... 0.02 Archaeplastida
LOC_Os07g12140.1 No alias RNA editing factor (POCO) 0.07 Archaeplastida
LOC_Os07g40750.1 No alias Pentatricopeptide repeat-containing protein At4g21705,... 0.03 Archaeplastida
LOC_Os12g07260.1 No alias RNA editing factor (POCO) 0.05 Archaeplastida
LOC_Os12g34340.1 No alias Pentatricopeptide repeat-containing protein At4g02820,... 0.03 Archaeplastida
MA_100637g0010 No alias Pentatricopeptide repeat-containing protein At1g60770... 0.03 Archaeplastida
MA_58210g0010 No alias RNA editing factor (POCO) 0.03 Archaeplastida
MA_7558g0010 No alias Pentatricopeptide repeat-containing protein At1g60770... 0.03 Archaeplastida
MA_94340g0010 No alias Pentatricopeptide repeat-containing protein At1g60770... 0.03 Archaeplastida
Pp3c18_8600V3.1 No alias PENTATRICOPEPTIDE REPEAT 596 0.05 Archaeplastida
Pp3c21_11730V3.1 No alias PENTATRICOPEPTIDE REPEAT 596 0.02 Archaeplastida
Zm00001e017396_P001 No alias RNA editing factor (POCO) 0.05 Archaeplastida
Zm00001e025470_P001 No alias RNA editing factor (POCO) 0.05 Archaeplastida
Zm00001e026211_P002 No alias Pentatricopeptide repeat-containing protein At1g02370,... 0.05 Archaeplastida
Zm00001e036620_P001 No alias Pentatricopeptide repeat-containing protein At1g60770... 0.04 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP Neighborhood
MF GO:0003690 double-stranded DNA binding IEP Neighborhood
MF GO:0004518 nuclease activity IEP Neighborhood
MF GO:0004519 endonuclease activity IEP Neighborhood
MF GO:0004526 ribonuclease P activity IEP Neighborhood
MF GO:0004549 tRNA-specific ribonuclease activity IEP Neighborhood
MF GO:0005488 binding IEP Neighborhood
MF GO:0005515 protein binding IEP Neighborhood
CC GO:0005741 mitochondrial outer membrane IEP Neighborhood
CC GO:0005759 mitochondrial matrix IEP Neighborhood
BP GO:0006139 nucleobase-containing compound metabolic process IEP Neighborhood
BP GO:0006351 transcription, DNA-templated IEP Neighborhood
BP GO:0006364 rRNA processing IEP Neighborhood
BP GO:0006396 RNA processing IEP Neighborhood
BP GO:0006725 cellular aromatic compound metabolic process IEP Neighborhood
MF GO:0008173 RNA methyltransferase activity IEP Neighborhood
BP GO:0016070 RNA metabolic process IEP Neighborhood
BP GO:0016072 rRNA metabolic process IEP Neighborhood
MF GO:0016597 amino acid binding IEP Neighborhood
MF GO:0016741 transferase activity, transferring one-carbon groups IEP Neighborhood
MF GO:0016743 carboxyl- or carbamoyltransferase activity IEP Neighborhood
BP GO:0018130 heterocycle biosynthetic process IEP Neighborhood
MF GO:0019239 deaminase activity IEP Neighborhood
BP GO:0019438 aromatic compound biosynthetic process IEP Neighborhood
CC GO:0019867 outer membrane IEP Neighborhood
CC GO:0031090 organelle membrane IEP Neighborhood
MF GO:0031406 carboxylic acid binding IEP Neighborhood
CC GO:0031966 mitochondrial membrane IEP Neighborhood
CC GO:0031968 organelle outer membrane IEP Neighborhood
CC GO:0031974 membrane-enclosed lumen IEP Neighborhood
BP GO:0032774 RNA biosynthetic process IEP Neighborhood
BP GO:0034470 ncRNA processing IEP Neighborhood
BP GO:0034641 cellular nitrogen compound metabolic process IEP Neighborhood
BP GO:0034654 nucleobase-containing compound biosynthetic process IEP Neighborhood
BP GO:0034660 ncRNA metabolic process IEP Neighborhood
MF GO:0043177 organic acid binding IEP Neighborhood
CC GO:0043233 organelle lumen IEP Neighborhood
CC GO:0044429 mitochondrial part IEP Neighborhood
CC GO:0044445 cytosolic part IEP Neighborhood
BP GO:0046483 heterocycle metabolic process IEP Neighborhood
CC GO:0061695 transferase complex, transferring phosphorus-containing groups IEP Neighborhood
CC GO:0070013 intracellular organelle lumen IEP Neighborhood
BP GO:0090304 nucleic acid metabolic process IEP Neighborhood
CC GO:0090730 Las1 complex IEP Neighborhood
BP GO:0097659 nucleic acid-templated transcription IEP Neighborhood
CC GO:0098588 bounding membrane of organelle IEP Neighborhood
CC GO:0098805 whole membrane IEP Neighborhood
MF GO:0140098 catalytic activity, acting on RNA IEP Neighborhood
BP GO:1901360 organic cyclic compound metabolic process IEP Neighborhood
BP GO:1901362 organic cyclic compound biosynthetic process IEP Neighborhood
CC GO:1902555 endoribonuclease complex IEP Neighborhood
CC GO:1902911 protein kinase complex IEP Neighborhood
CC GO:1905348 endonuclease complex IEP Neighborhood
CC GO:1905354 exoribonuclease complex IEP Neighborhood
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 147 176
IPR002885 Pentatricopeptide_repeat 236 279
IPR002885 Pentatricopeptide_repeat 180 225
No external refs found!