Solyc01g103050.3.1

Description : transcription factor (ARF)

Gene families : OG0000080 (Archaeplastida) Phylogenetic Tree(s): OG0000080_tree ,
OG_05_0000395 (LandPlants) Phylogenetic Tree(s): OG_05_0000395_tree ,
OG_06_0003855 (SeedPlants) Phylogenetic Tree(s): OG_06_0003855_tree

Sequence : coding (download), protein (download)

Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Solyc01g103050.3.1
Cluster	HCCA: Cluster_31

Target	Alias	Description	ECC score	Gene Family Method
GSVIVT01019566001	No alias	RNA biosynthesis.transcriptional activation.B3...	0.03	Archaeplastida
Gb_02925	No alias	transcription factor (ARF)	0.03	Archaeplastida
Gb_18738	No alias	transcription factor (ARF)	0.03	Archaeplastida
Gb_31132	No alias	transcription factor (ARF)	0.04	Archaeplastida
LOC_Os05g43920.1	No alias	transcription factor (ARF)	0.03	Archaeplastida
LOC_Os12g29520.1	No alias	transcription factor (ARF)	0.03	Archaeplastida
MA_566086g0010	No alias	transcription factor (ARF)	0.04	Archaeplastida
MA_69854g0010	No alias	transcription factor (ARF)	0.03	Archaeplastida
Pp3c1_14480V3.1	No alias	auxin response factor 6	0.02	Archaeplastida
Smo405821	No alias	Auxin response factor 24 OS=Oryza sativa subsp. japonica	0.02	Archaeplastida
Smo438333	No alias	Auxin response factor 11 OS=Oryza sativa subsp. indica	0.03	Archaeplastida
Solyc06g075150.3.1	No alias	transcription factor (ARF)	0.04	Archaeplastida
Solyc08g082630.3.1	No alias	transcription factor (ARF)	0.04	Archaeplastida
Solyc09g007810.4.1	No alias	transcription factor (ARF)	0.08	Archaeplastida
Zm00001e003229_P002	No alias	transcription factor (ARF)	0.03	Archaeplastida
Zm00001e003591_P003	No alias	transcription factor (ARF)	0.03	Archaeplastida
Zm00001e006577_P003	No alias	transcription factor (ARF)	0.05	Archaeplastida
Zm00001e013639_P001	No alias	transcription factor (ARF)	0.03	Archaeplastida
Zm00001e017798_P003	No alias	transcription factor (ARF)	0.04	Archaeplastida
Zm00001e018126_P002	No alias	transcription factor (ARF)	0.05	Archaeplastida
Zm00001e018761_P001	No alias	transcription factor (ARF)	0.03	Archaeplastida
Zm00001e020205_P004	No alias	transcription factor (ARF)	0.06	Archaeplastida
Zm00001e028396_P001	No alias	transcription factor (ARF)	0.03	Archaeplastida
Zm00001e030290_P005	No alias	transcription factor (ARF)	0.03	Archaeplastida
Zm00001e041910_P003	No alias	transcription factor (ARF)	0.04	Archaeplastida

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005634	nucleus	IEA	Interproscan
BP	GO:0006355	regulation of transcription, DNA-templated	IEA	Interproscan
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009719	response to endogenous stimulus	None	Extended
BP	GO:0009725	response to hormone	IEA	Interproscan
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0010033	response to organic substance	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
BP	GO:0042221	response to chemical	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
CC	GO:0044424	intracellular part	None	Extended
CC	GO:0044464	cell part	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0050896	response to stimulus	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1903506	regulation of nucleic acid-templated transcription	None	Extended
BP	GO:2000112	regulation of cellular macromolecule biosynthetic process	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

Toggle parental

Type	GO Term	Name	Evidence	Source
MF	GO:0003824	catalytic activity	IEP	Neighborhood
MF	GO:0004190	aspartic-type endopeptidase activity	IEP	Neighborhood
MF	GO:0015018	galactosylgalactosylxylosylprotein 3-beta-glucuronosyltransferase activity	IEP	Neighborhood
MF	GO:0015020	glucuronosyltransferase activity	IEP	Neighborhood
MF	GO:0016409	palmitoyltransferase activity	IEP	Neighborhood
MF	GO:0016740	transferase activity	IEP	Neighborhood
MF	GO:0070001	aspartic-type peptidase activity	IEP	Neighborhood

InterPro domains	Description	Start	Stop
IPR010525	Auxin_resp	254	336
IPR003340	B3_DNA-bd	128	228
IPR033389	AUX/IAA_dom	584	631
IPR033389	AUX/IAA_dom	531	576

External Links

No external refs found!

Solyc01g103050.3.1

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation