AMTR_s00022p00108690 (evm_27.TU.AmTr_v1.0_sc...)


Aliases : evm_27.TU.AmTr_v1.0_scaffold00022.96

Description : RNA processing.RNA modification.mRNA methylation.HAKAI E3 ubiquitin ligase


Gene families : OG0006398 (Archaeplastida) Phylogenetic Tree(s): OG0006398_tree ,
OG_05_0005512 (LandPlants) Phylogenetic Tree(s): OG_05_0005512_tree ,
OG_06_0006549 (SeedPlants) Phylogenetic Tree(s): OG_06_0006549_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00022p00108690
Cluster HCCA: Cluster_27

Target Alias Description ECC score Gene Family Method Actions
GSVIVT01034021001 No alias RNA processing.RNA modification.mRNA methylation.HAKAI... 0.03 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence

Type GO Term Name Evidence Source
MF GO:0003779 actin binding IEP Neighborhood
MF GO:0005488 binding IEP Neighborhood
MF GO:0005515 protein binding IEP Neighborhood
CC GO:0005667 transcription factor complex IEP Neighborhood
CC GO:0005669 transcription factor TFIID complex IEP Neighborhood
BP GO:0006352 DNA-templated transcription, initiation IEP Neighborhood
BP GO:0006520 cellular amino acid metabolic process IEP Neighborhood
BP GO:0006650 glycerophospholipid metabolic process IEP Neighborhood
BP GO:0007010 cytoskeleton organization IEP Neighborhood
MF GO:0008092 cytoskeletal protein binding IEP Neighborhood
MF GO:0008270 zinc ion binding IEP Neighborhood
BP GO:0008652 cellular amino acid biosynthetic process IEP Neighborhood
BP GO:0009719 response to endogenous stimulus IEP Neighborhood
BP GO:0009725 response to hormone IEP Neighborhood
BP GO:0010033 response to organic substance IEP Neighborhood
BP GO:0016053 organic acid biosynthetic process IEP Neighborhood
MF GO:0016307 phosphatidylinositol phosphate kinase activity IEP Neighborhood
BP GO:0042221 response to chemical IEP Neighborhood
BP GO:0044283 small molecule biosynthetic process IEP Neighborhood
CC GO:0044451 nucleoplasm part IEP Neighborhood
CC GO:0044798 nuclear transcription factor complex IEP Neighborhood
BP GO:0046394 carboxylic acid biosynthetic process IEP Neighborhood
BP GO:0046488 phosphatidylinositol metabolic process IEP Neighborhood
CC GO:0090575 RNA polymerase II transcription factor complex IEP Neighborhood

No InterPro domains available for this sequence

No external refs found!