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  5. Solyc01g104260.3.1

Solyc01g104260.3.1


Description : Probable E3 ubiquitin-protein ligase RHC1A OS=Arabidopsis thaliana (sp|o22197|rhc1a_arath : 110.0)


Gene families : OG0000041 (Archaeplastida) Phylogenetic Tree(s): OG0000041_tree ,
OG_05_0017477 (LandPlants) Phylogenetic Tree(s): OG_05_0017477_tree ,
OG_06_0017030 (SeedPlants) Phylogenetic Tree(s): OG_06_0017030_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc01g104260.3.1
Cluster HCCA: Cluster_55

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00056p00124260 evm_27.TU.AmTr_v1... Protein degradation.peptide tagging.Ubiquitin... 0.02 Archaeplastida
AMTR_s00157p00061490 evm_27.TU.AmTr_v1... Protein degradation.peptide tagging.Ubiquitin... 0.07 Archaeplastida
AT1G60360 No alias RING/U-box superfamily protein 0.23 Archaeplastida
AT1G68180 No alias RING/U-box superfamily protein 0.26 Archaeplastida
AT2G44330 No alias RING/U-box superfamily protein 0.04 Archaeplastida
AT3G19950 No alias RING/U-box superfamily protein 0.03 Archaeplastida
AT3G51325 No alias RING/U-box superfamily protein 0.03 Archaeplastida
AT5G20910 AIP2 RING/U-box superfamily protein 0.03 Archaeplastida
GSVIVT01020763001 No alias Protein degradation.peptide tagging.Ubiquitin... 0.16 Archaeplastida
GSVIVT01020765001 No alias Protein degradation.peptide tagging.Ubiquitin... 0.03 Archaeplastida
GSVIVT01022971001 No alias Protein degradation.peptide tagging.Ubiquitin... 0.08 Archaeplastida
GSVIVT01022973001 No alias Protein degradation.peptide tagging.Ubiquitin... 0.23 Archaeplastida
GSVIVT01034134001 No alias Protein degradation.peptide tagging.Ubiquitin... 0.04 Archaeplastida
Gb_30381 No alias Probable E3 ubiquitin-protein ligase RHC2A... 0.03 Archaeplastida
LOC_Os02g52870.1 No alias Probable E3 ubiquitin-protein ligase RHC1A... 0.02 Archaeplastida
LOC_Os06g08250.1 No alias no hits & (original description: none) 0.02 Archaeplastida
MA_19897g0010 No alias E3 ubiquitin-protein ligase RZF1 OS=Arabidopsis thaliana... 0.03 Archaeplastida
MA_227599g0010 No alias no hits & (original description: none) 0.04 Archaeplastida
MA_413614g0010 No alias no hits & (original description: none) 0.04 Archaeplastida
MA_79051g0010 No alias E3 ubiquitin-protein ligase RING1 OS=Gossypium hirsutum... 0.02 Archaeplastida
MA_8499g0020 No alias E3 ubiquitin-protein ligase CIP8 OS=Arabidopsis thaliana... 0.03 Archaeplastida
Mp8g17140.1 No alias no hits & (original description: none) 0.02 Archaeplastida
Solyc06g005650.2.1 No alias E3 ubiquitin-protein ligase RDUF2 OS=Arabidopsis... 0.05 Archaeplastida
Solyc07g055330.3.1 No alias no hits & (original description: none) 0.06 Archaeplastida
Zm00001e023806_P001 No alias Probable E3 ubiquitin-protein ligase RHC1A... 0.02 Archaeplastida
Zm00001e024003_P001 No alias E3 ubiquitin-protein ligase RING1 OS=Gossypium hirsutum... 0.03 Archaeplastida
Zm00001e024455_P001 No alias no hits & (original description: none) 0.03 Archaeplastida
Zm00001e027319_P001 No alias E3 ubiquitin-protein ligase SIRP1 OS=Oryza sativa subsp.... 0.02 Archaeplastida
Zm00001e030803_P001 No alias Probable E3 ubiquitin-protein ligase RHC1A... 0.14 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0004553 hydrolase activity, hydrolyzing O-glycosyl compounds IEP Neighborhood
CC GO:0005618 cell wall IEP Neighborhood
BP GO:0005975 carbohydrate metabolic process IEP Neighborhood
BP GO:0005984 disaccharide metabolic process IEP Neighborhood
BP GO:0005985 sucrose metabolic process IEP Neighborhood
MF GO:0016157 sucrose synthase activity IEP Neighborhood
MF GO:0016758 transferase activity, transferring hexosyl groups IEP Neighborhood
MF GO:0016762 xyloglucan:xyloglucosyl transferase activity IEP Neighborhood
MF GO:0016798 hydrolase activity, acting on glycosyl bonds IEP Neighborhood
CC GO:0030312 external encapsulating structure IEP Neighborhood
MF GO:0043531 ADP binding IEP Neighborhood
BP GO:0044262 cellular carbohydrate metabolic process IEP Neighborhood
MF GO:0046527 glucosyltransferase activity IEP Neighborhood
CC GO:0048046 apoplast IEP Neighborhood
InterPro domains Description Start Stop
IPR001841 Znf_RING 179 220
No external refs found!