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  5. AMTR_s00022p00112770

AMTR_s00022p00112770 (evm_27.TU.AmTr_v1.0_sc...)


Aliases : evm_27.TU.AmTr_v1.0_scaffold00022.100

Description : Photosynthesis.photophosphorylation.photosystem II.LHC-II complex.LHCq component


Gene families : OG0000035 (Archaeplastida) Phylogenetic Tree(s): OG0000035_tree ,
OG_05_0007547 (LandPlants) Phylogenetic Tree(s): OG_05_0007547_tree ,
OG_06_0007672 (SeedPlants) Phylogenetic Tree(s): OG_06_0007672_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00022p00112770
Cluster HCCA: Cluster_153

Target Alias Description ECC score Gene Family Method Actions
AT1G15820 CP24, LHCB6 light harvesting complex photosystem II subunit 6 0.04 Archaeplastida
AT1G19150 LHCA2*1, LHCA6 photosystem I light harvesting complex gene 6 0.07 Archaeplastida
AT1G29910 CAB3, AB180, LHCB1.2 chlorophyll A/B binding protein 3 0.03 Archaeplastida
AT1G45474 LHCA5 photosystem I light harvesting complex gene 5 0.09 Archaeplastida
AT1G61520 LHCA3 photosystem I light harvesting complex gene 3 0.06 Archaeplastida
AT1G76570 No alias Chlorophyll A-B binding family protein 0.03 Archaeplastida
AT2G05070 LHCB2.2, LHCB2 photosystem II light harvesting complex gene 2.2 0.03 Archaeplastida
AT2G05100 LHCB2.1, LHCB2 photosystem II light harvesting complex gene 2.1 0.02 Archaeplastida
AT3G08940 LHCB4.2 light harvesting complex photosystem II 0.03 Archaeplastida
AT3G47470 CAB4, LHCA4 light-harvesting chlorophyll-protein complex I subunit A4 0.03 Archaeplastida
AT3G54890 LHCA1 photosystem I light harvesting complex gene 1 0.03 Archaeplastida
AT3G61470 LHCA2 photosystem I light harvesting complex gene 2 0.05 Archaeplastida
AT4G10340 LHCB5 light harvesting complex of photosystem II 5 0.04 Archaeplastida
AT5G01530 LHCB4.1 light harvesting complex photosystem II 0.06 Archaeplastida
AT5G54270 LHCB3*1, LHCB3 light-harvesting chlorophyll B-binding protein 3 0.04 Archaeplastida
Cre06.g272650 No alias Photosynthesis.photophosphorylation.photosystem I.LHC-I... 0.03 Archaeplastida
Cre06.g278213 No alias Chlorophyll a-b binding protein P4, chloroplastic... 0.03 Archaeplastida
Cre06.g283050 No alias Photosynthesis.photophosphorylation.photosystem I.LHC-I... 0.03 Archaeplastida
Cre06.g283950 No alias Photosynthesis.photophosphorylation.photosystem... 0.02 Archaeplastida
Cre06.g284250 No alias Photosynthesis.photophosphorylation.photosystem... 0.01 Archaeplastida
Cre06.g285250 No alias Photosynthesis.photophosphorylation.photosystem... 0.02 Archaeplastida
Cre07.g344950 No alias Photosystem I chlorophyll a/b-binding protein 5,... 0.03 Archaeplastida
Cre10.g425900 No alias Chlorophyll a-b binding protein 4, chloroplastic... 0.04 Archaeplastida
Cre10.g452050 No alias Photosynthesis.photophosphorylation.photosystem I.LHC-I... 0.04 Archaeplastida
Cre11.g467573 No alias Photosynthesis.photophosphorylation.photosystem I.LHC-I... 0.03 Archaeplastida
Cre12.g508750 No alias Photosystem I chlorophyll a/b-binding protein 6,... 0.03 Archaeplastida
Cre12.g548400 No alias Photosynthesis.photophosphorylation.photosystem... 0.02 Archaeplastida
Cre12.g548950 No alias Photosynthesis.photophosphorylation.photosystem... 0.02 Archaeplastida
Cre16.g673650 No alias Photosynthesis.photophosphorylation.photosystem... 0.03 Archaeplastida
Cre16.g687900 No alias Photosynthesis.photophosphorylation.photosystem I.LHC-I... 0.03 Archaeplastida
Cre17.g720250 No alias Photosynthesis.photophosphorylation.photosystem... 0.03 Archaeplastida
GSVIVT01009498001 No alias Photosynthesis.photophosphorylation.photosystem I.LHC-I... 0.06 Archaeplastida
GSVIVT01010483001 No alias Photosynthesis.photophosphorylation.photosystem I.LHC-I... 0.09 Archaeplastida
GSVIVT01013450001 No alias Photosynthesis.photophosphorylation.photosystem... 0.1 Archaeplastida
GSVIVT01015045001 No alias Photosynthesis.photophosphorylation.photosystem I.LHC-I... 0.07 Archaeplastida
GSVIVT01016295001 No alias Photosynthesis.photophosphorylation.photosystem I.LHC-I... 0.03 Archaeplastida
GSVIVT01019377001 No alias Photosystem I chlorophyll a/b-binding protein 3-1,... 0.07 Archaeplastida
Gb_10163 No alias component LHCa3 of LHC-I complex 0.03 Archaeplastida
Gb_25594 No alias Photosystem I chlorophyll a/b-binding protein 5,... 0.07 Archaeplastida
Gb_25595 No alias Photosystem I chlorophyll a/b-binding protein 5,... 0.03 Archaeplastida
LOC_Os02g10390.1 No alias component LHCa3 of LHC-I complex 0.03 Archaeplastida
LOC_Os02g52650.1 No alias component LHCa5 of LHC-I complex 0.05 Archaeplastida
LOC_Os06g21590.1 No alias component LHCa1 of LHC-I complex 0.03 Archaeplastida
LOC_Os07g37240.1 No alias component LHCb4 of LHC-II complex 0.02 Archaeplastida
LOC_Os07g38960.1 No alias component LHCa2 of LHC-I complex 0.04 Archaeplastida
LOC_Os08g33820.1 No alias component LHCa4 of LHC-I complex 0.03 Archaeplastida
LOC_Os09g12540.1 No alias component LHCq of LHC-II complex 0.06 Archaeplastida
LOC_Os09g17740.1 No alias component LHCb1/2/3 of LHC-II complex 0.03 Archaeplastida
MA_10431493g0010 No alias component LHCa1 of LHC-I complex 0.03 Archaeplastida
MA_10435703g0010 No alias Chlorophyll a-b binding protein 7, chloroplastic... 0.02 Archaeplastida
MA_129206g0010 No alias component LHCb4 of LHC-II complex 0.04 Archaeplastida
MA_131587g0010 No alias component LHCb1/2/3 of LHC-II complex 0.04 Archaeplastida
MA_176279g0010 No alias component LHCb5 of LHC-II complex 0.06 Archaeplastida
MA_18273g0010 No alias no hits & (original description: none) 0.04 Archaeplastida
MA_65346g0010 No alias Chlorophyll a-b binding protein P4, chloroplastic... 0.04 Archaeplastida
MA_815900g0010 No alias component LHCa3 of LHC-I complex 0.04 Archaeplastida
Mp1g16850.1 No alias component LHCb4 of LHC-II complex 0.05 Archaeplastida
Mp1g29620.1 No alias component LHCb1/2/3 of LHC-II complex 0.03 Archaeplastida
Mp2g15420.1 No alias component LHCa1 of LHC-I complex 0.04 Archaeplastida
Mp3g07840.1 No alias component LHCa4 of LHC-I complex 0.05 Archaeplastida
Mp4g00930.1 No alias component LHCa3 of LHC-I complex 0.03 Archaeplastida
Mp4g10900.1 No alias component LHCb5 of LHC-II complex 0.06 Archaeplastida
Mp6g01650.1 No alias component LHCb6 of LHC-II complex 0.04 Archaeplastida
Mp7g05880.1 No alias component LHCb1/2/3 of LHC-II complex 0.02 Archaeplastida
Mp7g05890.1 No alias component LHCb1/2/3 of LHC-II complex 0.03 Archaeplastida
Mp7g06740.1 No alias component LHCb1/2/3 of LHC-II complex 0.02 Archaeplastida
Mp7g06760.1 No alias component LHCb1/2/3 of LHC-II complex 0.03 Archaeplastida
Mp7g06770.1 No alias component LHCb1/2/3 of LHC-II complex 0.03 Archaeplastida
Mp7g06780.1 No alias component LHCb1/2/3 of LHC-II complex 0.02 Archaeplastida
Mp7g08940.1 No alias component LHCb1/2/3 of LHC-II complex 0.03 Archaeplastida
Mp7g09180.1 No alias component LHCb1/2/3 of LHC-II complex 0.02 Archaeplastida
Mp8g13180.1 No alias component LHCa2 of LHC-I complex 0.03 Archaeplastida
Pp3c10_25450V3.1 No alias photosystem I light harvesting complex gene 2 0.02 Archaeplastida
Pp3c12_19200V3.1 No alias photosystem I light harvesting complex gene 2 0.04 Archaeplastida
Pp3c12_25460V3.1 No alias light harvesting complex photosystem II 0.04 Archaeplastida
Pp3c13_14980V3.1 No alias photosystem I light harvesting complex gene 1 0.02 Archaeplastida
Pp3c16_16040V3.1 No alias photosystem I light harvesting complex gene 3 0.04 Archaeplastida
Pp3c18_8100V3.1 No alias photosystem II light harvesting complex gene 2.1 0.03 Archaeplastida
Pp3c1_34210V3.1 No alias light harvesting complex photosystem II subunit 6 0.03 Archaeplastida
Pp3c1_34240V3.1 No alias light harvesting complex photosystem II subunit 6 0.02 Archaeplastida
Pp3c21_3950V3.1 No alias photosystem II light harvesting complex gene 2.1 0.04 Archaeplastida
Pp3c27_7010V3.1 No alias photosystem I light harvesting complex gene 3 0.02 Archaeplastida
Pp3c27_7020V3.1 No alias photosystem I light harvesting complex gene 3 0.02 Archaeplastida
Pp3c2_36480V3.1 No alias photosystem II light harvesting complex gene 2.1 0.02 Archaeplastida
Pp3c3_12510V3.1 No alias photosystem I light harvesting complex gene 1 0.03 Archaeplastida
Pp3c4_11854V3.1 No alias photosystem I light harvesting complex gene 5 0.03 Archaeplastida
Pp3c4_28370V3.1 No alias light harvesting complex of photosystem II 5 0.05 Archaeplastida
Pp3c4_5680V3.1 No alias light harvesting complex photosystem II 0.03 Archaeplastida
Pp3c4_5690V3.1 No alias light harvesting complex photosystem II 0.03 Archaeplastida
Pp3c6_22090V3.1 No alias photosystem I light harvesting complex gene 3 0.02 Archaeplastida
Smo104804 No alias Photosynthesis.photophosphorylation.photosystem... 0.02 Archaeplastida
Smo271833 No alias Photosynthesis.photophosphorylation.photosystem... 0.02 Archaeplastida
Smo403333 No alias Photosystem I chlorophyll a/b-binding protein 5,... 0.05 Archaeplastida
Smo444370 No alias Photosynthesis.photophosphorylation.photosystem... 0.02 Archaeplastida
Solyc03g115900.4.1 No alias component LHCa4 of LHC-I complex 0.03 Archaeplastida
Solyc05g056050.3.1 No alias component LHCa1 of LHC-I complex 0.03 Archaeplastida
Solyc06g063370.3.1 No alias component LHCb5 of LHC-II complex 0.03 Archaeplastida
Solyc07g022900.4.1 No alias component LHCa5 of LHC-I complex 0.06 Archaeplastida
Solyc07g047850.3.1 No alias component LHCb1/2/3 of LHC-II complex 0.05 Archaeplastida
Solyc09g014520.3.1 No alias component LHCb4 of LHC-II complex 0.04 Archaeplastida
Solyc10g006230.3.1 No alias component LHCa2 of LHC-I complex 0.04 Archaeplastida
Solyc10g007690.3.1 No alias component LHCa3 of LHC-I complex 0.05 Archaeplastida
Solyc12g006140.2.1 No alias component LHCb1/2/3 of LHC-II complex 0.03 Archaeplastida
Solyc12g009200.2.1 No alias component LHCa6 of LHC-I complex 0.04 Archaeplastida
Solyc12g011280.2.1 No alias component LHCa3 of LHC-I complex 0.04 Archaeplastida
Solyc12g011450.2.1 No alias component LHCb1/2/3 of LHC-II complex 0.03 Archaeplastida
Zm00001e004129_P001 No alias component LHCa4 of LHC-I complex 0.03 Archaeplastida
Zm00001e011045_P002 No alias component LHCb5 of LHC-II complex 0.02 Archaeplastida
Zm00001e013742_P001 No alias component LHCa1 of LHC-I complex 0.03 Archaeplastida
Zm00001e021290_P001 No alias component LHCb5 of LHC-II complex 0.03 Archaeplastida
Zm00001e022453_P001 No alias component LHCa4 of LHC-I complex 0.04 Archaeplastida
Zm00001e033739_P001 No alias component LHCq of LHC-II complex 0.1 Archaeplastida
Zm00001e035235_P001 No alias component LHCb4 of LHC-II complex 0.03 Archaeplastida
Zm00001e035349_P002 No alias component LHCa2 of LHC-I complex 0.03 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0002161 aminoacyl-tRNA editing activity IEP Neighborhood
MF GO:0004601 peroxidase activity IEP Neighborhood
MF GO:0004602 glutathione peroxidase activity IEP Neighborhood
MF GO:0004853 uroporphyrinogen decarboxylase activity IEP Neighborhood
BP GO:0006457 protein folding IEP Neighborhood
BP GO:0006778 porphyrin-containing compound metabolic process IEP Neighborhood
BP GO:0006779 porphyrin-containing compound biosynthetic process IEP Neighborhood
BP GO:0006979 response to oxidative stress IEP Neighborhood
BP GO:0008150 biological_process IEP Neighborhood
BP GO:0008152 metabolic process IEP Neighborhood
MF GO:0009496 plastoquinol--plastocyanin reductase activity IEP Neighborhood
CC GO:0009507 chloroplast IEP Neighborhood
CC GO:0009536 plastid IEP Neighborhood
CC GO:0009654 photosystem II oxygen evolving complex IEP Neighborhood
BP GO:0009987 cellular process IEP Neighborhood
CC GO:0015934 large ribosomal subunit IEP Neighborhood
MF GO:0016209 antioxidant activity IEP Neighborhood
BP GO:0016226 iron-sulfur cluster assembly IEP Neighborhood
MF GO:0016679 oxidoreductase activity, acting on diphenols and related substances as donors IEP Neighborhood
MF GO:0016684 oxidoreductase activity, acting on peroxide as acceptor IEP Neighborhood
MF GO:0016868 intramolecular transferase activity, phosphotransferases IEP Neighborhood
MF GO:0016987 sigma factor activity IEP Neighborhood
BP GO:0019725 cellular homeostasis IEP Neighborhood
BP GO:0031163 metallo-sulfur cluster assembly IEP Neighborhood
BP GO:0033014 tetrapyrrole biosynthetic process IEP Neighborhood
CC GO:0034357 photosynthetic membrane IEP Neighborhood
BP GO:0034641 cellular nitrogen compound metabolic process IEP Neighborhood
BP GO:0042592 homeostatic process IEP Neighborhood
CC GO:0042651 thylakoid membrane IEP Neighborhood
BP GO:0044271 cellular nitrogen compound biosynthetic process IEP Neighborhood
CC GO:0044391 ribosomal subunit IEP Neighborhood
CC GO:0044424 intracellular part IEP Neighborhood
CC GO:0044436 thylakoid part IEP Neighborhood
CC GO:0044464 cell part IEP Neighborhood
BP GO:0045454 cell redox homeostasis IEP Neighborhood
MF GO:0046422 violaxanthin de-epoxidase activity IEP Neighborhood
BP GO:0051186 cofactor metabolic process IEP Neighborhood
MF GO:0051536 iron-sulfur cluster binding IEP Neighborhood
MF GO:0051537 2 iron, 2 sulfur cluster binding IEP Neighborhood
MF GO:0051540 metal cluster binding IEP Neighborhood
MF GO:0052880 oxidoreductase activity, acting on diphenols and related substances as donors, with copper protein as acceptor IEP Neighborhood
BP GO:0065008 regulation of biological quality IEP Neighborhood
InterPro domains Description Start Stop
IPR022796 Chloroa_b-bind 124 299
No external refs found!