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  5. Solyc01g104560.3.1

Solyc01g104560.3.1


Description : component PININ of RNA quality control Exon Junction complex


Gene families : OG0005056 (Archaeplastida) Phylogenetic Tree(s): OG0005056_tree ,
OG_05_0005081 (LandPlants) Phylogenetic Tree(s): OG_05_0005081_tree ,
OG_06_0005233 (SeedPlants) Phylogenetic Tree(s): OG_06_0005233_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc01g104560.3.1
Cluster HCCA: Cluster_131

Target Alias Description ECC score Gene Family Method Actions
AT1G15200 No alias protein-protein interaction regulator family protein 0.05 Archaeplastida
Gb_25266 No alias component PININ of RNA quality control Exon Junction complex 0.04 Archaeplastida
Gb_25267 No alias component PININ of RNA quality control Exon Junction complex 0.03 Archaeplastida
Gb_25268 No alias component PININ of RNA quality control Exon Junction complex 0.05 Archaeplastida
Gb_25269 No alias component PININ of RNA quality control Exon Junction complex 0.02 Archaeplastida
LOC_Os03g49520.1 No alias component PININ of RNA quality control Exon Junction complex 0.02 Archaeplastida
MA_49744g0010 No alias component PININ of RNA quality control Exon Junction complex 0.02 Archaeplastida
MA_503521g0010 No alias no hits & (original description: none) 0.05 Archaeplastida
Mp4g01130.1 No alias component PININ of RNA quality control Exon Junction complex 0.05 Archaeplastida
Pp3c14_12690V3.1 No alias protein-protein interaction regulator family protein 0.04 Archaeplastida
Smo410528 No alias RNA processing.RNA quality control Exon Junction complex... 0.07 Archaeplastida
Zm00001e005379_P001 No alias component PININ of RNA quality control Exon Junction complex 0.04 Archaeplastida
Zm00001e012229_P001 No alias component PININ of RNA quality control Exon Junction complex 0.06 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
BP GO:0000350 generation of catalytic spliceosome for second transesterification step IEP Neighborhood
BP GO:0000413 protein peptidyl-prolyl isomerization IEP Neighborhood
MF GO:0003676 nucleic acid binding IEP Neighborhood
MF GO:0003682 chromatin binding IEP Neighborhood
MF GO:0003723 RNA binding IEP Neighborhood
MF GO:0003755 peptidyl-prolyl cis-trans isomerase activity IEP Neighborhood
MF GO:0004066 asparagine synthase (glutamine-hydrolyzing) activity IEP Neighborhood
MF GO:0004402 histone acetyltransferase activity IEP Neighborhood
MF GO:0005488 binding IEP Neighborhood
CC GO:0005634 nucleus IEP Neighborhood
CC GO:0005694 chromosome IEP Neighborhood
BP GO:0006139 nucleobase-containing compound metabolic process IEP Neighborhood
BP GO:0006325 chromatin organization IEP Neighborhood
BP GO:0006338 chromatin remodeling IEP Neighborhood
BP GO:0006351 transcription, DNA-templated IEP Neighborhood
BP GO:0006396 RNA processing IEP Neighborhood
BP GO:0006397 mRNA processing IEP Neighborhood
BP GO:0006473 protein acetylation IEP Neighborhood
BP GO:0006475 internal protein amino acid acetylation IEP Neighborhood
BP GO:0006528 asparagine metabolic process IEP Neighborhood
BP GO:0006529 asparagine biosynthetic process IEP Neighborhood
BP GO:0006725 cellular aromatic compound metabolic process IEP Neighborhood
BP GO:0006996 organelle organization IEP Neighborhood
BP GO:0009066 aspartate family amino acid metabolic process IEP Neighborhood
BP GO:0009067 aspartate family amino acid biosynthetic process IEP Neighborhood
BP GO:0016043 cellular component organization IEP Neighborhood
BP GO:0016070 RNA metabolic process IEP Neighborhood
BP GO:0016071 mRNA metabolic process IEP Neighborhood
BP GO:0016458 gene silencing IEP Neighborhood
BP GO:0016573 histone acetylation IEP Neighborhood
MF GO:0016853 isomerase activity IEP Neighborhood
MF GO:0016859 cis-trans isomerase activity IEP Neighborhood
MF GO:0016884 carbon-nitrogen ligase activity, with glutamine as amido-N-donor IEP Neighborhood
BP GO:0018193 peptidyl-amino acid modification IEP Neighborhood
BP GO:0018208 peptidyl-proline modification IEP Neighborhood
BP GO:0018393 internal peptidyl-lysine acetylation IEP Neighborhood
BP GO:0018394 peptidyl-lysine acetylation IEP Neighborhood
BP GO:0022618 ribonucleoprotein complex assembly IEP Neighborhood
BP GO:0031047 gene silencing by RNA IEP Neighborhood
MF GO:0031491 nucleosome binding IEP Neighborhood
MF GO:0034212 peptide N-acetyltransferase activity IEP Neighborhood
BP GO:0034641 cellular nitrogen compound metabolic process IEP Neighborhood
BP GO:0043044 ATP-dependent chromatin remodeling IEP Neighborhood
CC GO:0043226 organelle IEP Neighborhood
CC GO:0043229 intracellular organelle IEP Neighborhood
BP GO:0043543 protein acylation IEP Neighborhood
BP GO:0046483 heterocycle metabolic process IEP Neighborhood
BP GO:0051276 chromosome organization IEP Neighborhood
MF GO:0061733 peptide-lysine-N-acetyltransferase activity IEP Neighborhood
BP GO:0071826 ribonucleoprotein complex subunit organization IEP Neighborhood
BP GO:0071840 cellular component organization or biogenesis IEP Neighborhood
BP GO:0090304 nucleic acid metabolic process IEP Neighborhood
MF GO:0097159 organic cyclic compound binding IEP Neighborhood
BP GO:0097659 nucleic acid-templated transcription IEP Neighborhood
BP GO:1901360 organic cyclic compound metabolic process IEP Neighborhood
MF GO:1901363 heterocyclic compound binding IEP Neighborhood
InterPro domains Description Start Stop
IPR006786 Pinin_SDK_MemA 160 287
No external refs found!