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  5. Solyc01g105610.1.1

Solyc01g105610.1.1


Description : RING-H2-class E3 ligase


Gene families : OG0000004 (Archaeplastida) Phylogenetic Tree(s): No tree available for this family ,
OG_05_0000003 (LandPlants) Phylogenetic Tree(s): OG_05_0000003_tree ,
OG_06_0001298 (SeedPlants) Phylogenetic Tree(s): OG_06_0001298_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc01g105610.1.1

Target Alias Description ECC score Gene Family Method Actions
AT3G62690 ATL5 AtL5 0.04 Archaeplastida
AT4G09100 No alias RING/U-box superfamily protein 0.03 Archaeplastida
AT4G24015 No alias RING/U-box superfamily protein 0.01 Archaeplastida
AT4G35840 No alias RING/U-box superfamily protein 0.02 Archaeplastida
GSVIVT01038717001 No alias Protein degradation.peptide tagging.Ubiquitin... 0.06 Archaeplastida
LOC_Os01g11480.1 No alias RING-H2-class E3 ligase 0.02 Archaeplastida
LOC_Os02g46600.1 No alias RING-H2-class E3 ligase 0.02 Archaeplastida
LOC_Os03g22110.1 No alias no hits & (original description: none) 0.02 Archaeplastida
LOC_Os03g57410.1 No alias Putative RING-H2 finger protein ATL71 OS=Arabidopsis... 0.02 Archaeplastida
MA_201391g0010 No alias Probable E3 ubiquitin-protein ligase RHA1A... 0.02 Archaeplastida
MA_222729g0010 No alias RING-H2-class E3 ligase 0.01 Archaeplastida
MA_63503g0010 No alias no hits & (original description: none) 0.01 Archaeplastida
MA_96368g0010 No alias RING-H2-class E3 ligase 0.01 Archaeplastida
Smo87949 No alias Protein degradation.peptide tagging.Ubiquitin... 0.01 Archaeplastida
Solyc01g081040.4.1 No alias RING-H2-class E3 ligase 0.05 Archaeplastida
Solyc09g066300.3.1 No alias RING-H2-class E3 ligase 0.03 Archaeplastida
Solyc10g009487.1.1 No alias RING-H2 finger protein ATL20 OS=Arabidopsis thaliana... 0.05 Archaeplastida
Zm00001e016092_P001 No alias RING-H2-class E3 ligase 0.03 Archaeplastida
Zm00001e023515_P001 No alias RING-H2-class E3 ligase 0.01 Archaeplastida
Zm00001e026906_P001 No alias no hits & (original description: none) 0.01 Archaeplastida
Zm00001e030930_P001 No alias no hits & (original description: none) 0.01 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0004553 hydrolase activity, hydrolyzing O-glycosyl compounds IEP Neighborhood
MF GO:0004650 polygalacturonase activity IEP Neighborhood
BP GO:0005975 carbohydrate metabolic process IEP Neighborhood
MF GO:0016798 hydrolase activity, acting on glycosyl bonds IEP Neighborhood
InterPro domains Description Start Stop
IPR001841 Znf_RING 163 206
No external refs found!