Aliases : evm_27.TU.AmTr_v1.0_scaffold00022.118
Description : Pentatricopeptide repeat-containing protein At3g09040, mitochondrial OS=Arabidopsis thaliana
Gene families : OG0000000 (Archaeplastida) Phylogenetic Tree(s): No tree available for this family ,
OG_05_0000000 (LandPlants) Phylogenetic Tree(s): OG_05_0000000_tree ,
OG_06_0000000 (SeedPlants) Phylogenetic Tree(s): OG_06_0000000_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
Type | Description | Actions |
---|---|---|
Neighborhood | HRR: AMTR_s00022p00127120 | |
Cluster | HCCA: Cluster_204 |
Target | Alias | Description | ECC score | Gene Family Method | Actions |
---|---|---|---|---|---|
AT1G15510 | VAC1, ECB2, ATECB2 | Tetratricopeptide repeat (TPR)-like superfamily protein | 0.03 | Archaeplastida | |
AT1G18485 | No alias | Pentatricopeptide repeat (PPR) superfamily protein | 0.04 | Archaeplastida | |
AT2G02980 | OTP85 | Pentatricopeptide repeat (PPR) superfamily protein | 0.05 | Archaeplastida | |
AT3G22150 | No alias | Tetratricopeptide repeat (TPR)-like superfamily protein | 0.03 | Archaeplastida | |
AT3G57430 | OTP84 | Tetratricopeptide repeat (TPR)-like superfamily protein | 0.02 | Archaeplastida | |
AT3G63370 | OTP86 | Tetratricopeptide repeat (TPR)-like superfamily protein | 0.03 | Archaeplastida | |
GSVIVT01000178001 | No alias | RNA processing.organelle machineries.RNA... | 0.04 | Archaeplastida | |
GSVIVT01009227001 | No alias | Pentatricopeptide repeat-containing protein At2g22070... | 0.04 | Archaeplastida | |
GSVIVT01009407001 | No alias | Pentatricopeptide repeat-containing protein At2g27610... | 0.03 | Archaeplastida | |
GSVIVT01011333001 | No alias | Pentatricopeptide repeat-containing protein At1g08070,... | 0.03 | Archaeplastida | |
GSVIVT01012461001 | No alias | Pentatricopeptide repeat-containing protein At1g11290,... | 0.03 | Archaeplastida | |
GSVIVT01020091001 | No alias | RNA processing.organelle machineries.RNA... | 0.03 | Archaeplastida | |
GSVIVT01022894001 | No alias | Pentatricopeptide repeat-containing protein At1g20230... | 0.02 | Archaeplastida | |
GSVIVT01023971001 | No alias | Pentatricopeptide repeat-containing protein At4g35130,... | 0.03 | Archaeplastida | |
GSVIVT01031251001 | No alias | Pentatricopeptide repeat-containing protein At5g48910... | 0.03 | Archaeplastida | |
GSVIVT01036142001 | No alias | Pentatricopeptide repeat-containing protein At5g66520... | 0.03 | Archaeplastida | |
GSVIVT01037944001 | No alias | Pentatricopeptide repeat-containing protein At1g50270... | 0.02 | Archaeplastida | |
Gb_24633 | No alias | Pentatricopeptide repeat-containing protein At4g13650... | 0.02 | Archaeplastida | |
Gb_26158 | No alias | RNA editing factor (OTP82) | 0.02 | Archaeplastida | |
LOC_Os01g10800.1 | No alias | Pentatricopeptide repeat-containing protein DOT4,... | 0.02 | Archaeplastida | |
LOC_Os02g06880.1 | No alias | Pentatricopeptide repeat-containing protein At4g21065... | 0.02 | Archaeplastida | |
LOC_Os02g18810.1 | No alias | Putative pentatricopeptide repeat-containing protein... | 0.02 | Archaeplastida | |
LOC_Os02g50280.1 | No alias | Pentatricopeptide repeat-containing protein At1g11290,... | 0.02 | Archaeplastida | |
LOC_Os03g59264.1 | No alias | lectin chaperone (CRT) | 0.02 | Archaeplastida | |
LOC_Os04g39410.1 | No alias | RNA editing factor (OTP86) | 0.02 | Archaeplastida | |
LOC_Os05g38190.2 | No alias | Pentatricopeptide repeat-containing protein At2g27610... | 0.02 | Archaeplastida | |
LOC_Os05g49920.1 | No alias | RNA editing factor (ECB2/VAC1) | 0.02 | Archaeplastida | |
LOC_Os07g09370.1 | No alias | RNA editing factor (CRR28) | 0.02 | Archaeplastida | |
MA_7907g0020 | No alias | Pentatricopeptide repeat-containing protein At3g57430,... | 0.02 | Archaeplastida | |
MA_8319g0010 | No alias | Pentatricopeptide repeat-containing protein At3g24000,... | 0.02 | Archaeplastida | |
Pp3c17_23250V3.1 | No alias | Tetratricopeptide repeat (TPR)-like superfamily protein | 0.02 | Archaeplastida | |
Pp3c22_1710V3.1 | No alias | Pentatricopeptide repeat (PPR) superfamily protein | 0.04 | Archaeplastida | |
Smo399 | No alias | Pentatricopeptide repeat-containing protein At3g03580... | 0.02 | Archaeplastida | |
Smo98955 | No alias | Pentatricopeptide repeat-containing protein At2g13600... | 0.03 | Archaeplastida | |
Solyc01g098150.3.1 | No alias | Pentatricopeptide repeat-containing protein At5g03800... | 0.03 | Archaeplastida | |
Solyc03g114660.1.1 | No alias | Pentatricopeptide repeat-containing protein At1g18485... | 0.03 | Archaeplastida | |
Solyc04g076800.3.1 | No alias | Pentatricopeptide repeat-containing protein At4g13650... | 0.02 | Archaeplastida | |
Zm00001e000301_P001 | No alias | Pentatricopeptide repeat-containing protein At4g35130,... | 0.03 | Archaeplastida | |
Zm00001e005067_P001 | No alias | Pentatricopeptide repeat-containing protein At2g42920,... | 0.02 | Archaeplastida | |
Zm00001e032499_P001 | No alias | no hits & (original description: none) | 0.03 | Archaeplastida |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
No GO annotation available for this sequence |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
BP | GO:0000154 | rRNA modification | IEP | Neighborhood |
MF | GO:0000166 | nucleotide binding | IEP | Neighborhood |
BP | GO:0001510 | RNA methylation | IEP | Neighborhood |
MF | GO:0001882 | nucleoside binding | IEP | Neighborhood |
MF | GO:0001883 | purine nucleoside binding | IEP | Neighborhood |
MF | GO:0002161 | aminoacyl-tRNA editing activity | IEP | Neighborhood |
MF | GO:0003674 | molecular_function | IEP | Neighborhood |
MF | GO:0003723 | RNA binding | IEP | Neighborhood |
MF | GO:0003747 | translation release factor activity | IEP | Neighborhood |
MF | GO:0003779 | actin binding | IEP | Neighborhood |
MF | GO:0003824 | catalytic activity | IEP | Neighborhood |
MF | GO:0004345 | glucose-6-phosphate dehydrogenase activity | IEP | Neighborhood |
MF | GO:0004386 | helicase activity | IEP | Neighborhood |
MF | GO:0004789 | thiamine-phosphate diphosphorylase activity | IEP | Neighborhood |
MF | GO:0004812 | aminoacyl-tRNA ligase activity | IEP | Neighborhood |
MF | GO:0005488 | binding | IEP | Neighborhood |
MF | GO:0005524 | ATP binding | IEP | Neighborhood |
MF | GO:0005525 | GTP binding | IEP | Neighborhood |
CC | GO:0005737 | cytoplasm | IEP | Neighborhood |
CC | GO:0005789 | endoplasmic reticulum membrane | IEP | Neighborhood |
BP | GO:0006006 | glucose metabolic process | IEP | Neighborhood |
BP | GO:0006139 | nucleobase-containing compound metabolic process | IEP | Neighborhood |
BP | GO:0006396 | RNA processing | IEP | Neighborhood |
BP | GO:0006399 | tRNA metabolic process | IEP | Neighborhood |
BP | GO:0006415 | translational termination | IEP | Neighborhood |
BP | GO:0006418 | tRNA aminoacylation for protein translation | IEP | Neighborhood |
BP | GO:0006497 | protein lipidation | IEP | Neighborhood |
BP | GO:0006505 | GPI anchor metabolic process | IEP | Neighborhood |
BP | GO:0006506 | GPI anchor biosynthetic process | IEP | Neighborhood |
BP | GO:0006520 | cellular amino acid metabolic process | IEP | Neighborhood |
BP | GO:0006661 | phosphatidylinositol biosynthetic process | IEP | Neighborhood |
BP | GO:0006664 | glycolipid metabolic process | IEP | Neighborhood |
BP | GO:0006725 | cellular aromatic compound metabolic process | IEP | Neighborhood |
BP | GO:0006766 | vitamin metabolic process | IEP | Neighborhood |
BP | GO:0006767 | water-soluble vitamin metabolic process | IEP | Neighborhood |
BP | GO:0006772 | thiamine metabolic process | IEP | Neighborhood |
MF | GO:0008026 | ATP-dependent helicase activity | IEP | Neighborhood |
MF | GO:0008079 | translation termination factor activity | IEP | Neighborhood |
MF | GO:0008092 | cytoskeletal protein binding | IEP | Neighborhood |
MF | GO:0008144 | drug binding | IEP | Neighborhood |
MF | GO:0008373 | sialyltransferase activity | IEP | Neighborhood |
MF | GO:0008374 | O-acyltransferase activity | IEP | Neighborhood |
BP | GO:0009110 | vitamin biosynthetic process | IEP | Neighborhood |
BP | GO:0009228 | thiamine biosynthetic process | IEP | Neighborhood |
BP | GO:0009247 | glycolipid biosynthetic process | IEP | Neighborhood |
CC | GO:0009654 | photosystem II oxygen evolving complex | IEP | Neighborhood |
BP | GO:0016070 | RNA metabolic process | IEP | Neighborhood |
MF | GO:0016149 | translation release factor activity, codon specific | IEP | Neighborhood |
MF | GO:0016462 | pyrophosphatase activity | IEP | Neighborhood |
MF | GO:0016746 | transferase activity, transferring acyl groups | IEP | Neighborhood |
MF | GO:0016765 | transferase activity, transferring alkyl or aryl (other than methyl) groups | IEP | Neighborhood |
MF | GO:0016787 | hydrolase activity | IEP | Neighborhood |
MF | GO:0016788 | hydrolase activity, acting on ester bonds | IEP | Neighborhood |
MF | GO:0016874 | ligase activity | IEP | Neighborhood |
MF | GO:0016875 | ligase activity, forming carbon-oxygen bonds | IEP | Neighborhood |
MF | GO:0016887 | ATPase activity | IEP | Neighborhood |
MF | GO:0017076 | purine nucleotide binding | IEP | Neighborhood |
MF | GO:0017111 | nucleoside-triphosphatase activity | IEP | Neighborhood |
MF | GO:0019001 | guanyl nucleotide binding | IEP | Neighborhood |
CC | GO:0019898 | extrinsic component of membrane | IEP | Neighborhood |
BP | GO:0022411 | cellular component disassembly | IEP | Neighborhood |
MF | GO:0030554 | adenyl nucleotide binding | IEP | Neighborhood |
MF | GO:0030674 | protein binding, bridging | IEP | Neighborhood |
MF | GO:0030976 | thiamine pyrophosphate binding | IEP | Neighborhood |
BP | GO:0031167 | rRNA methylation | IEP | Neighborhood |
MF | GO:0032549 | ribonucleoside binding | IEP | Neighborhood |
MF | GO:0032550 | purine ribonucleoside binding | IEP | Neighborhood |
MF | GO:0032553 | ribonucleotide binding | IEP | Neighborhood |
MF | GO:0032555 | purine ribonucleotide binding | IEP | Neighborhood |
MF | GO:0032559 | adenyl ribonucleotide binding | IEP | Neighborhood |
MF | GO:0032561 | guanyl ribonucleotide binding | IEP | Neighborhood |
BP | GO:0032984 | protein-containing complex disassembly | IEP | Neighborhood |
BP | GO:0034470 | ncRNA processing | IEP | Neighborhood |
BP | GO:0034641 | cellular nitrogen compound metabolic process | IEP | Neighborhood |
BP | GO:0034660 | ncRNA metabolic process | IEP | Neighborhood |
MF | GO:0035639 | purine ribonucleoside triphosphate binding | IEP | Neighborhood |
MF | GO:0036094 | small molecule binding | IEP | Neighborhood |
BP | GO:0042364 | water-soluble vitamin biosynthetic process | IEP | Neighborhood |
MF | GO:0042578 | phosphoric ester hydrolase activity | IEP | Neighborhood |
MF | GO:0042623 | ATPase activity, coupled | IEP | Neighborhood |
BP | GO:0042723 | thiamine-containing compound metabolic process | IEP | Neighborhood |
BP | GO:0042724 | thiamine-containing compound biosynthetic process | IEP | Neighborhood |
BP | GO:0043038 | amino acid activation | IEP | Neighborhood |
BP | GO:0043039 | tRNA aminoacylation | IEP | Neighborhood |
MF | GO:0043167 | ion binding | IEP | Neighborhood |
MF | GO:0043168 | anion binding | IEP | Neighborhood |
BP | GO:0043624 | cellular protein complex disassembly | IEP | Neighborhood |
BP | GO:0044272 | sulfur compound biosynthetic process | IEP | Neighborhood |
BP | GO:0044281 | small molecule metabolic process | IEP | Neighborhood |
CC | GO:0044424 | intracellular part | IEP | Neighborhood |
CC | GO:0044464 | cell part | IEP | Neighborhood |
MF | GO:0044877 | protein-containing complex binding | IEP | Neighborhood |
BP | GO:0045017 | glycerolipid biosynthetic process | IEP | Neighborhood |
BP | GO:0046467 | membrane lipid biosynthetic process | IEP | Neighborhood |
BP | GO:0046474 | glycerophospholipid biosynthetic process | IEP | Neighborhood |
BP | GO:0046483 | heterocycle metabolic process | IEP | Neighborhood |
MF | GO:0050662 | coenzyme binding | IEP | Neighborhood |
MF | GO:0051015 | actin filament binding | IEP | Neighborhood |
MF | GO:0060090 | molecular adaptor activity | IEP | Neighborhood |
MF | GO:0070035 | purine NTP-dependent helicase activity | IEP | Neighborhood |
BP | GO:0071704 | organic substance metabolic process | IEP | Neighborhood |
BP | GO:0072527 | pyrimidine-containing compound metabolic process | IEP | Neighborhood |
BP | GO:0072528 | pyrimidine-containing compound biosynthetic process | IEP | Neighborhood |
BP | GO:0090304 | nucleic acid metabolic process | IEP | Neighborhood |
MF | GO:0097159 | organic cyclic compound binding | IEP | Neighborhood |
MF | GO:0097367 | carbohydrate derivative binding | IEP | Neighborhood |
MF | GO:0140098 | catalytic activity, acting on RNA | IEP | Neighborhood |
MF | GO:0140101 | catalytic activity, acting on a tRNA | IEP | Neighborhood |
MF | GO:1901265 | nucleoside phosphate binding | IEP | Neighborhood |
BP | GO:1901360 | organic cyclic compound metabolic process | IEP | Neighborhood |
MF | GO:1901363 | heterocyclic compound binding | IEP | Neighborhood |
MF | GO:1901681 | sulfur compound binding | IEP | Neighborhood |
CC | GO:1990204 | oxidoreductase complex | IEP | Neighborhood |
No external refs found! |