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  5. Solyc01g106720.1.1

Solyc01g106720.1.1


Description : transcription factor (MADS/AGL)


Gene families : OG0000011 (Archaeplastida) Phylogenetic Tree(s): OG0000011_tree ,
OG_05_0000008 (LandPlants) Phylogenetic Tree(s): OG_05_0000008_tree ,
OG_06_0000013 (SeedPlants) Phylogenetic Tree(s): OG_06_0000013_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc01g106720.1.1
Cluster HCCA: Cluster_371

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00002p00262770 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.MADS box... 0.05 Archaeplastida
AMTR_s00013p00114420 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.MADS box... 0.01 Archaeplastida
AMTR_s00025p00244880 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.MADS box... 0.01 Archaeplastida
AT1G77980 AGL66 AGAMOUS-like 66 0.01 Archaeplastida
AT2G26320 AGL33 AGAMOUS-like 33 0.03 Archaeplastida
AT4G36590 No alias MADS-box transcription factor family protein 0.02 Archaeplastida
GSVIVT01012110001 No alias RNA biosynthesis.transcriptional activation.MADS box... 0.01 Archaeplastida
GSVIVT01021534001 No alias RNA biosynthesis.transcriptional activation.MADS box... 0.02 Archaeplastida
GSVIVT01025945001 No alias RNA biosynthesis.transcriptional activation.MADS box... 0.01 Archaeplastida
GSVIVT01026207001 No alias RNA biosynthesis.transcriptional activation.MADS box... 0.01 Archaeplastida
GSVIVT01035477001 No alias RNA biosynthesis.transcriptional activation.MADS box... 0.01 Archaeplastida
LOC_Os09g02780.1 No alias transcription factor (MADS/AGL) 0.02 Archaeplastida
MA_10256834g0010 No alias transcription factor (MADS/AGL) 0.02 Archaeplastida
MA_10432602g0010 No alias no hits & (original description: none) 0.14 Archaeplastida
MA_63212g0010 No alias no hits & (original description: none) 0.02 Archaeplastida
MA_9771g0010 No alias transcription factor (MADS/AGL) 0.03 Archaeplastida
Pp3c17_24040V3.1 No alias AGAMOUS-like 66 0.01 Archaeplastida
Smo113962 No alias RNA biosynthesis.transcriptional activation.MADS box... 0.01 Archaeplastida
Smo5961 No alias RNA biosynthesis.transcriptional activation.MADS box... 0.01 Archaeplastida
Smo85851 No alias RNA biosynthesis.transcriptional activation.MADS box... 0.01 Archaeplastida
Solyc01g093960.3.1 No alias transcription factor (MADS/AGL) 0.01 Archaeplastida
Solyc01g106710.1.1 No alias component MED19 of head module of MEDIATOR transcription... 0.02 Archaeplastida
Solyc05g015750.3.1 No alias transcription factor (MADS/AGL) 0.03 Archaeplastida
Solyc10g080030.2.1 No alias transcription factor (MADS/AGL) 0.01 Archaeplastida
Zm00001e000846_P003 No alias transcription factor (MADS/AGL) 0.02 Archaeplastida
Zm00001e003667_P001 No alias transcription factor (MADS/AGL) 0.02 Archaeplastida
Zm00001e006950_P001 No alias transcription factor (MADS/AGL) 0.02 Archaeplastida
Zm00001e010125_P001 No alias transcription factor (MADS/AGL) 0.03 Archaeplastida
Zm00001e015447_P001 No alias transcription factor (MADS/AGL) 0.06 Archaeplastida
Zm00001e016529_P004 No alias transcription factor (MADS/AGL) 0.03 Archaeplastida
Zm00001e026007_P004 No alias no hits & (original description: none) 0.01 Archaeplastida
Zm00001e030373_P001 No alias transcription factor (MADS/AGL) 0.01 Archaeplastida
Zm00001e031267_P003 No alias transcription factor (MADS/AGL) 0.02 Archaeplastida
Zm00001e033123_P001 No alias transcription factor (MADS/AGL) 0.03 Archaeplastida
Zm00001e034629_P001 No alias transcription factor (MADS/AGL) 0.02 Archaeplastida
Zm00001e038716_P004 No alias transcription factor (MADS/AGL) 0.02 Archaeplastida
Zm00001e039774_P001 No alias transcription factor (MADS/AGL) 0.03 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA Interproscan
MF GO:0046983 protein dimerization activity IEA Interproscan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR002100 TF_MADSbox 17 63
No external refs found!