1. Home
  2. Species
  3. Amborella trichopoda
  4. Sequence
  5. AMTR_s00022p00130870

AMTR_s00022p00130870 (evm_27.TU.AmTr_v1.0_sc...)


Aliases : evm_27.TU.AmTr_v1.0_scaffold00022.124

Description : Pentatricopeptide repeat-containing protein At3g14580, mitochondrial OS=Arabidopsis thaliana


Gene families : OG0000198 (Archaeplastida) Phylogenetic Tree(s): OG0000198_tree ,
OG_05_0000086 (LandPlants) Phylogenetic Tree(s): OG_05_0000086_tree ,
OG_06_0009792 (SeedPlants) Phylogenetic Tree(s): OG_06_0009792_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00022p00130870
Cluster HCCA: Cluster_263

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00029p00214000 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At3g09060... 0.03 Archaeplastida
AMTR_s00111p00140430 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At4g01400,... 0.04 Archaeplastida
AT1G53330 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.02 Archaeplastida
AT1G80150 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.04 Archaeplastida
AT3G09060 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.03 Archaeplastida
AT4G01400 No alias FUNCTIONS IN: molecular_function unknown; INVOLVED IN:... 0.03 Archaeplastida
GSVIVT01024665001 No alias Pentatricopeptide repeat-containing protein At3g09060... 0.03 Archaeplastida
Gb_06893 No alias Putative pentatricopeptide repeat-containing protein... 0.03 Archaeplastida
Gb_07822 No alias Pentatricopeptide repeat-containing protein At3g09060... 0.03 Archaeplastida
Gb_08958 No alias Pentatricopeptide repeat-containing protein At5g46100... 0.02 Archaeplastida
Gb_12002 No alias Pentatricopeptide repeat-containing protein At3g48810... 0.02 Archaeplastida
Gb_21920 No alias Pentatricopeptide repeat-containing protein At1g07740,... 0.02 Archaeplastida
LOC_Os01g48140.1 No alias Pentatricopeptide repeat-containing protein At5g46100... 0.04 Archaeplastida
LOC_Os02g26890.1 No alias Pentatricopeptide repeat-containing protein At5g18475... 0.03 Archaeplastida
LOC_Os05g04160.1 No alias Pentatricopeptide repeat-containing protein At3g48810... 0.02 Archaeplastida
LOC_Os08g39050.1 No alias Pentatricopeptide repeat-containing protein At1g80150,... 0.02 Archaeplastida
MA_125741g0010 No alias Pentatricopeptide repeat-containing protein At5g16420,... 0.02 Archaeplastida
MA_128052g0010 No alias Pentatricopeptide repeat-containing protein At3g53700,... 0.03 Archaeplastida
MA_137206g0010 No alias PPR-type mitochondrial ribosome regulatory protein (PPR336) 0.02 Archaeplastida
MA_525159g0010 No alias Pentatricopeptide repeat-containing protein At1g07740,... 0.02 Archaeplastida
MA_71816g0020 No alias Pentatricopeptide repeat-containing protein At3g14580,... 0.02 Archaeplastida
MA_742945g0010 No alias Pentatricopeptide repeat-containing protein At5g16420,... 0.02 Archaeplastida
MA_80720g0010 No alias Putative pentatricopeptide repeat-containing protein... 0.02 Archaeplastida
Solyc02g079830.1.1 No alias Pentatricopeptide repeat-containing protein At3g13160,... 0.04 Archaeplastida
Solyc09g061760.1.1 No alias Pentatricopeptide repeat-containing protein At2g17525,... 0.02 Archaeplastida
Solyc12g014330.1.1 No alias Putative pentatricopeptide repeat-containing protein... 0.05 Archaeplastida
Solyc12g035170.3.1 No alias Putative pentatricopeptide repeat-containing protein... 0.03 Archaeplastida
Zm00001e003447_P001 No alias no hits & (original description: none) 0.03 Archaeplastida
Zm00001e011589_P001 No alias no hits & (original description: none) 0.04 Archaeplastida
Zm00001e027557_P001 No alias Pentatricopeptide repeat-containing protein At3g48810... 0.03 Archaeplastida
Zm00001e028732_P001 No alias Pentatricopeptide repeat-containing protein At3g09060... 0.03 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
Toggle parental
Type GO Term Name Evidence Source
MF GO:0004659 prenyltransferase activity IEP Neighborhood
MF GO:0016765 transferase activity, transferring alkyl or aryl (other than methyl) groups IEP Neighborhood
MF GO:0051287 NAD binding IEP Neighborhood
MF GO:0070403 NAD+ binding IEP Neighborhood
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 101 126
IPR002885 Pentatricopeptide_repeat 242 287
IPR002885 Pentatricopeptide_repeat 312 341
IPR002885 Pentatricopeptide_repeat 347 376
IPR002885 Pentatricopeptide_repeat 200 230
No external refs found!