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  5. Solyc01g108140.4.1

Solyc01g108140.4.1


Description : transcription factor (REM)


Gene families : OG0000741 (Archaeplastida) Phylogenetic Tree(s): OG0000741_tree ,
OG_05_0001199 (LandPlants) Phylogenetic Tree(s): OG_05_0001199_tree ,
OG_06_0001296 (SeedPlants) Phylogenetic Tree(s): OG_06_0001296_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc01g108140.4.1
Cluster HCCA: Cluster_281

Target Alias Description ECC score Gene Family Method Actions
AT1G49480 RTV1 related to vernalization1 1 0.05 Archaeplastida
AT5G58280 No alias AP2/B3-like transcriptional factor family protein 0.02 Archaeplastida
GSVIVT01009519001 No alias RNA biosynthesis.transcriptional activation.B3... 0.05 Archaeplastida
GSVIVT01022143001 No alias RNA biosynthesis.transcriptional activation.B3... 0.03 Archaeplastida
Gb_35990 No alias transcription factor (REM) 0.04 Archaeplastida
LOC_Os03g08620.1 No alias transcription factor (REM) 0.05 Archaeplastida
MA_10433064g0010 No alias transcription factor (REM) 0.03 Archaeplastida
MA_59943g0010 No alias no hits & (original description: none) 0.03 Archaeplastida
Mp2g08790.1 No alias transcription factor (REM) 0.02 Archaeplastida
Pp3c14_21500V3.1 No alias AP2/B3-like transcriptional factor family protein 0.02 Archaeplastida
Pp3c17_16170V3.1 No alias AP2/B3-like transcriptional factor family protein 0.02 Archaeplastida
Pp3c1_15410V3.1 No alias AP2/B3-like transcriptional factor family protein 0.03 Archaeplastida
Zm00001e000624_P003 No alias transcription factor (REM) 0.05 Archaeplastida
Zm00001e020584_P001 No alias transcription factor (REM) 0.05 Archaeplastida
Zm00001e038852_P001 No alias transcription factor (REM) 0.02 Archaeplastida
Zm00001e040028_P004 No alias transcription factor (REM) 0.09 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP Neighborhood
MF GO:0003684 damaged DNA binding IEP Neighborhood
MF GO:0003905 alkylbase DNA N-glycosylase activity IEP Neighborhood
MF GO:0003906 DNA-(apurinic or apyrimidinic site) endonuclease activity IEP Neighborhood
MF GO:0005515 protein binding IEP Neighborhood
MF GO:0005524 ATP binding IEP Neighborhood
BP GO:0006139 nucleobase-containing compound metabolic process IEP Neighborhood
BP GO:0006259 DNA metabolic process IEP Neighborhood
BP GO:0006281 DNA repair IEP Neighborhood
BP GO:0006284 base-excision repair IEP Neighborhood
BP GO:0006289 nucleotide-excision repair IEP Neighborhood
BP GO:0006334 nucleosome assembly IEP Neighborhood
BP GO:0006725 cellular aromatic compound metabolic process IEP Neighborhood
BP GO:0006807 nitrogen compound metabolic process IEP Neighborhood
BP GO:0006950 response to stress IEP Neighborhood
BP GO:0006974 cellular response to DNA damage stimulus IEP Neighborhood
MF GO:0008725 DNA-3-methyladenine glycosylase activity IEP Neighborhood
BP GO:0009987 cellular process IEP Neighborhood
MF GO:0016627 oxidoreductase activity, acting on the CH-CH group of donors IEP Neighborhood
MF GO:0016787 hydrolase activity IEP Neighborhood
MF GO:0016799 hydrolase activity, hydrolyzing N-glycosyl compounds IEP Neighborhood
MF GO:0016817 hydrolase activity, acting on acid anhydrides IEP Neighborhood
MF GO:0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides IEP Neighborhood
MF GO:0017076 purine nucleotide binding IEP Neighborhood
MF GO:0017150 tRNA dihydrouridine synthase activity IEP Neighborhood
MF GO:0019104 DNA N-glycosylase activity IEP Neighborhood
MF GO:0032553 ribonucleotide binding IEP Neighborhood
MF GO:0032555 purine ribonucleotide binding IEP Neighborhood
BP GO:0033554 cellular response to stress IEP Neighborhood
CC GO:0033643 host cell part IEP Neighborhood
CC GO:0033646 host intracellular part IEP Neighborhood
CC GO:0033647 host intracellular organelle IEP Neighborhood
CC GO:0033648 host intracellular membrane-bounded organelle IEP Neighborhood
BP GO:0034641 cellular nitrogen compound metabolic process IEP Neighborhood
BP GO:0034728 nucleosome organization IEP Neighborhood
MF GO:0035639 purine ribonucleoside triphosphate binding IEP Neighborhood
MF GO:0036094 small molecule binding IEP Neighborhood
CC GO:0042025 host cell nucleus IEP Neighborhood
MF GO:0043167 ion binding IEP Neighborhood
MF GO:0043168 anion binding IEP Neighborhood
BP GO:0043170 macromolecule metabolic process IEP Neighborhood
MF GO:0043733 DNA-3-methylbase glycosylase activity IEP Neighborhood
CC GO:0044217 other organism part IEP Neighborhood
BP GO:0044237 cellular metabolic process IEP Neighborhood
BP GO:0044238 primary metabolic process IEP Neighborhood
BP GO:0044260 cellular macromolecule metabolic process IEP Neighborhood
BP GO:0046483 heterocycle metabolic process IEP Neighborhood
BP GO:0050896 response to stimulus IEP Neighborhood
BP GO:0051716 cellular response to stimulus IEP Neighborhood
BP GO:0065004 protein-DNA complex assembly IEP Neighborhood
BP GO:0071704 organic substance metabolic process IEP Neighborhood
BP GO:0071824 protein-DNA complex subunit organization IEP Neighborhood
BP GO:0090304 nucleic acid metabolic process IEP Neighborhood
MF GO:0097367 carbohydrate derivative binding IEP Neighborhood
MF GO:0140097 catalytic activity, acting on DNA IEP Neighborhood
MF GO:0140098 catalytic activity, acting on RNA IEP Neighborhood
MF GO:1901265 nucleoside phosphate binding IEP Neighborhood
BP GO:1901360 organic cyclic compound metabolic process IEP Neighborhood
InterPro domains Description Start Stop
IPR003340 B3_DNA-bd 129 218
No external refs found!