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  5. Solyc01g111300.4.1

Solyc01g111300.4.1


Description : RNA chaperone (CSP). mRNA chaperone (CSD)


Gene families : OG0001543 (Archaeplastida) Phylogenetic Tree(s): OG0001543_tree ,
OG_05_0001927 (LandPlants) Phylogenetic Tree(s): OG_05_0001927_tree ,
OG_06_0002403 (SeedPlants) Phylogenetic Tree(s): OG_06_0002403_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc01g111300.4.1
Cluster HCCA: Cluster_53

Target Alias Description ECC score Gene Family Method Actions
AT2G17870 ATCSP3, CSP3 cold shock domain protein 3 0.04 Archaeplastida
AT2G21060 GRP2B, ATGRP2B, ATCSP4 glycine-rich protein 2B 0.03 Archaeplastida
AT4G38680 ATCSP2, GRP2, CSDP2, CSP2 glycine rich protein 2 0.08 Archaeplastida
Gb_15589 No alias RNA chaperone (CSP). mRNA chaperone (CSD) 0.03 Archaeplastida
LOC_Os08g03520.1 No alias RNA chaperone (CSP). mRNA chaperone (CSD) 0.03 Archaeplastida
Pp3c5_6070V3.1 No alias glycine-rich protein 2B 0.02 Archaeplastida
Pp3c6_23240V3.1 No alias cold shock domain protein 1 0.02 Archaeplastida
Zm00001e041725_P001 No alias RNA chaperone (CSP). mRNA chaperone (CSD) 0.05 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
MF GO:0008270 zinc ion binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003713 transcription coactivator activity IEP Neighborhood
MF GO:0003735 structural constituent of ribosome IEP Neighborhood
MF GO:0005198 structural molecule activity IEP Neighborhood
BP GO:0006412 translation IEP Neighborhood
BP GO:0006518 peptide metabolic process IEP Neighborhood
BP GO:0007275 multicellular organism development IEP Neighborhood
BP GO:0009059 macromolecule biosynthetic process IEP Neighborhood
CC GO:0015934 large ribosomal subunit IEP Neighborhood
BP GO:0032501 multicellular organismal process IEP Neighborhood
BP GO:0032502 developmental process IEP Neighborhood
CC GO:0032991 protein-containing complex IEP Neighborhood
BP GO:0034645 cellular macromolecule biosynthetic process IEP Neighborhood
BP GO:0043043 peptide biosynthetic process IEP Neighborhood
BP GO:0043603 cellular amide metabolic process IEP Neighborhood
BP GO:0043604 amide biosynthetic process IEP Neighborhood
CC GO:0044391 ribosomal subunit IEP Neighborhood
CC GO:0044424 intracellular part IEP Neighborhood
CC GO:0044464 cell part IEP Neighborhood
BP GO:0048856 anatomical structure development IEP Neighborhood
BP GO:1901566 organonitrogen compound biosynthetic process IEP Neighborhood
CC GO:1990904 ribonucleoprotein complex IEP Neighborhood
InterPro domains Description Start Stop
IPR002059 CSP_DNA-bd 10 74
IPR001878 Znf_CCHC 126 142
IPR001878 Znf_CCHC 172 188
No external refs found!