AMTR_s00022p00172100 (evm_27.TU.AmTr_v1.0_sc...)


Aliases : evm_27.TU.AmTr_v1.0_scaffold00022.180

Description : DNA mismatch repair protein MSH7 OS=Arabidopsis thaliana


Gene families : OG0001515 (Archaeplastida) Phylogenetic Tree(s): OG0001515_tree ,
OG_05_0006412 (LandPlants) Phylogenetic Tree(s): OG_05_0006412_tree ,
OG_06_0007207 (SeedPlants) Phylogenetic Tree(s): OG_06_0007207_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00022p00172100
Cluster HCCA: Cluster_96

Target Alias Description ECC score Gene Family Method Actions
AT3G24495 MSH7, ATMSH7, MSH6-2 MUTS homolog 7 0.03 Archaeplastida
Cpa|evm.model.tig00000489.16 No alias DNA mismatch repair protein MSH6 OS=Arabidopsis thaliana 0.01 Archaeplastida
Cre05.g235750 No alias DNA mismatch repair protein MSH6 OS=Arabidopsis thaliana 0.02 Archaeplastida
GSVIVT01015407001 No alias DNA damage response.DNA repair mechanisms.mismatch... 0.04 Archaeplastida
LOC_Os09g24220.1 No alias component MSH6 of MSH2-x mismatch repair heterodimers 0.02 Archaeplastida
Solyc01g079520.3.1 No alias component MSH6 of MSH2-x mismatch repair heterodimers 0.07 Archaeplastida
Zm00001e016678_P004 No alias component MSH7 of MSH2-x mismatch repair heterodimers 0.03 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0005524 ATP binding IEA Interproscan
BP GO:0006298 mismatch repair IEA Interproscan
MF GO:0030983 mismatched DNA binding IEA Interproscan
Type GO Term Name Evidence Source
MF GO:0004672 protein kinase activity IEP Neighborhood
MF GO:0005515 protein binding IEP Neighborhood
BP GO:0006464 cellular protein modification process IEP Neighborhood
BP GO:0006468 protein phosphorylation IEP Neighborhood
BP GO:0006793 phosphorus metabolic process IEP Neighborhood
BP GO:0006796 phosphate-containing compound metabolic process IEP Neighborhood
MF GO:0016301 kinase activity IEP Neighborhood
BP GO:0016310 phosphorylation IEP Neighborhood
MF GO:0016772 transferase activity, transferring phosphorus-containing groups IEP Neighborhood
MF GO:0016773 phosphotransferase activity, alcohol group as acceptor IEP Neighborhood
BP GO:0036211 protein modification process IEP Neighborhood
BP GO:0043412 macromolecule modification IEP Neighborhood
MF GO:0043565 sequence-specific DNA binding IEP Neighborhood
BP GO:0044267 cellular protein metabolic process IEP Neighborhood
MF GO:0140096 catalytic activity, acting on a protein IEP Neighborhood
InterPro domains Description Start Stop
IPR007860 DNA_mmatch_repair_MutS_con_dom 215 270
IPR007695 DNA_mismatch_repair_MutS-lik_N 86 190
No external refs found!