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  5. Solyc02g014115.1.1

Solyc02g014115.1.1


Description : transcription factor (HUA2)


Gene families : OG0001669 (Archaeplastida) Phylogenetic Tree(s): OG0001669_tree ,
OG_05_0001314 (LandPlants) Phylogenetic Tree(s): OG_05_0001314_tree ,
OG_06_0004134 (SeedPlants) Phylogenetic Tree(s): OG_06_0004134_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc02g014115.1.1
Cluster HCCA: Cluster_233

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00025p00100140 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.HUA2... 0.03 Archaeplastida
AMTR_s00029p00079800 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.HUA2... 0.02 Archaeplastida
AT5G23150 HUA2 Tudor/PWWP/MBT domain-containing protein 0.06 Archaeplastida
GSVIVT01011100001 No alias RNA biosynthesis.transcriptional activation.HUA2... 0.09 Archaeplastida
GSVIVT01012049001 No alias RNA biosynthesis.transcriptional activation.HUA2... 0.1 Archaeplastida
Gb_39860 No alias transcription factor (HUA2) 0.03 Archaeplastida
LOC_Os03g24339.1 No alias transcription factor (HUA2) 0.05 Archaeplastida
LOC_Os07g46180.1 No alias transcription factor (HUA2) 0.1 Archaeplastida
MA_6096998g0010 No alias no hits & (original description: none) 0.03 Archaeplastida
MA_9359526g0010 No alias no hits & (original description: none) 0.04 Archaeplastida
Mp8g15320.1 No alias transcription factor (HUA2) 0.05 Archaeplastida
Pp3c11_11950V3.1 No alias Tudor/PWWP/MBT domain-containing protein 0.03 Archaeplastida
Pp3c7_13020V3.1 No alias Tudor/PWWP/MBT domain-containing protein 0.04 Archaeplastida
Pp3c7_13060V3.1 No alias Tudor/PWWP/MBT domain-containing protein 0.07 Archaeplastida
Smo404055 No alias RNA biosynthesis.transcriptional activation.HUA2... 0.03 Archaeplastida
Zm00001e001720_P002 No alias transcription factor (HUA2) 0.06 Archaeplastida
Zm00001e024276_P001 No alias transcription factor (HUA2) 0.06 Archaeplastida
Zm00001e029104_P001 No alias transcription factor (HUA2) 0.05 Archaeplastida
Zm00001e038169_P004 No alias transcription factor (HUA2) 0.06 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP Neighborhood
MF GO:0003723 RNA binding IEP Neighborhood
MF GO:0004527 exonuclease activity IEP Neighborhood
MF GO:0005488 binding IEP Neighborhood
CC GO:0005643 nuclear pore IEP Neighborhood
CC GO:0005667 transcription factor complex IEP Neighborhood
CC GO:0005669 transcription factor TFIID complex IEP Neighborhood
BP GO:0006139 nucleobase-containing compound metabolic process IEP Neighborhood
BP GO:0006352 DNA-templated transcription, initiation IEP Neighborhood
BP GO:0006366 transcription by RNA polymerase II IEP Neighborhood
BP GO:0006396 RNA processing IEP Neighborhood
BP GO:0006725 cellular aromatic compound metabolic process IEP Neighborhood
BP GO:0006913 nucleocytoplasmic transport IEP Neighborhood
MF GO:0008270 zinc ion binding IEP Neighborhood
BP GO:0009059 macromolecule biosynthetic process IEP Neighborhood
BP GO:0016070 RNA metabolic process IEP Neighborhood
MF GO:0017056 structural constituent of nuclear pore IEP Neighborhood
BP GO:0018130 heterocycle biosynthetic process IEP Neighborhood
BP GO:0019438 aromatic compound biosynthetic process IEP Neighborhood
BP GO:0031123 RNA 3'-end processing IEP Neighborhood
BP GO:0031124 mRNA 3'-end processing IEP Neighborhood
BP GO:0032774 RNA biosynthetic process IEP Neighborhood
BP GO:0034641 cellular nitrogen compound metabolic process IEP Neighborhood
BP GO:0034654 nucleobase-containing compound biosynthetic process IEP Neighborhood
CC GO:0044422 organelle part IEP Neighborhood
CC GO:0044428 nuclear part IEP Neighborhood
CC GO:0044446 intracellular organelle part IEP Neighborhood
CC GO:0044451 nucleoplasm part IEP Neighborhood
CC GO:0044798 nuclear transcription factor complex IEP Neighborhood
BP GO:0046483 heterocycle metabolic process IEP Neighborhood
BP GO:0051169 nuclear transport IEP Neighborhood
BP GO:0090304 nucleic acid metabolic process IEP Neighborhood
CC GO:0090575 RNA polymerase II transcription factor complex IEP Neighborhood
MF GO:0097159 organic cyclic compound binding IEP Neighborhood
BP GO:1901360 organic cyclic compound metabolic process IEP Neighborhood
BP GO:1901362 organic cyclic compound biosynthetic process IEP Neighborhood
MF GO:1901363 heterocyclic compound binding IEP Neighborhood
InterPro domains Description Start Stop
IPR006903 RNA_pol_II-bd 112 179
No external refs found!