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Description : Large ribosomal RNA subunit accumulation protein YCED homolog 1, chloroplastic OS=Arabidopsis thaliana (sp|q9lt27|yced1_arath : 297.0)
Gene families : OG0007387 (Archaeplastida) Phylogenetic Tree(s): OG0007387_tree ,
OG_05_0008363 (LandPlants) Phylogenetic Tree(s): OG_05_0008363_tree ,
OG_06_0007170 (SeedPlants) Phylogenetic Tree(s): OG_06_0007170_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | HRR: Solyc02g021050.3.1 | |
| Cluster | HCCA: Cluster_33 |
| Target | Alias | Description | ECC score | Gene Family Method | Actions |
|---|---|---|---|---|---|
| AT3G19810 | No alias | Protein of unknown function (DUF177) | 0.05 | Archaeplastida | |
| GSVIVT01010764001 | No alias | Large ribosomal RNA subunit accumulation protein YCED... | 0.03 | Archaeplastida | |
| LOC_Os04g01780.2 | No alias | Large ribosomal RNA subunit accumulation protein YCED... | 0.05 | Archaeplastida | |
| Mp1g26130.1 | No alias | Large ribosomal RNA subunit accumulation protein YCED... | 0.02 | Archaeplastida | |
| Pp3c4_29820V3.1 | No alias | Protein of unknown function (DUF177) | 0.03 | Archaeplastida |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
No GO annotation available for this sequence |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0000166 | nucleotide binding | IEP | Neighborhood |
| MF | GO:0000774 | adenyl-nucleotide exchange factor activity | IEP | Neighborhood |
| BP | GO:0001522 | pseudouridine synthesis | IEP | Neighborhood |
| MF | GO:0003690 | double-stranded DNA binding | IEP | Neighborhood |
| MF | GO:0004812 | aminoacyl-tRNA ligase activity | IEP | Neighborhood |
| MF | GO:0005488 | binding | IEP | Neighborhood |
| BP | GO:0006139 | nucleobase-containing compound metabolic process | IEP | Neighborhood |
| BP | GO:0006364 | rRNA processing | IEP | Neighborhood |
| BP | GO:0006457 | protein folding | IEP | Neighborhood |
| BP | GO:0006725 | cellular aromatic compound metabolic process | IEP | Neighborhood |
| BP | GO:0006801 | superoxide metabolic process | IEP | Neighborhood |
| BP | GO:0009451 | RNA modification | IEP | Neighborhood |
| MF | GO:0009982 | pseudouridine synthase activity | IEP | Neighborhood |
| BP | GO:0016070 | RNA metabolic process | IEP | Neighborhood |
| BP | GO:0016072 | rRNA metabolic process | IEP | Neighborhood |
| MF | GO:0016462 | pyrophosphatase activity | IEP | Neighborhood |
| MF | GO:0016817 | hydrolase activity, acting on acid anhydrides | IEP | Neighborhood |
| MF | GO:0016818 | hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides | IEP | Neighborhood |
| MF | GO:0016866 | intramolecular transferase activity | IEP | Neighborhood |
| MF | GO:0016875 | ligase activity, forming carbon-oxygen bonds | IEP | Neighborhood |
| MF | GO:0016887 | ATPase activity | IEP | Neighborhood |
| MF | GO:0017076 | purine nucleotide binding | IEP | Neighborhood |
| MF | GO:0017111 | nucleoside-triphosphatase activity | IEP | Neighborhood |
| MF | GO:0030554 | adenyl nucleotide binding | IEP | Neighborhood |
| MF | GO:0031072 | heat shock protein binding | IEP | Neighborhood |
| BP | GO:0034660 | ncRNA metabolic process | IEP | Neighborhood |
| MF | GO:0035639 | purine ribonucleoside triphosphate binding | IEP | Neighborhood |
| MF | GO:0036094 | small molecule binding | IEP | Neighborhood |
| MF | GO:0042802 | identical protein binding | IEP | Neighborhood |
| MF | GO:0042803 | protein homodimerization activity | IEP | Neighborhood |
| BP | GO:0043038 | amino acid activation | IEP | Neighborhood |
| BP | GO:0043039 | tRNA aminoacylation | IEP | Neighborhood |
| MF | GO:0043167 | ion binding | IEP | Neighborhood |
| BP | GO:0046483 | heterocycle metabolic process | IEP | Neighborhood |
| MF | GO:0051082 | unfolded protein binding | IEP | Neighborhood |
| MF | GO:0051087 | chaperone binding | IEP | Neighborhood |
| MF | GO:0060589 | nucleoside-triphosphatase regulator activity | IEP | Neighborhood |
| MF | GO:0060590 | ATPase regulator activity | IEP | Neighborhood |
| BP | GO:0072593 | reactive oxygen species metabolic process | IEP | Neighborhood |
| BP | GO:0090304 | nucleic acid metabolic process | IEP | Neighborhood |
| MF | GO:0097159 | organic cyclic compound binding | IEP | Neighborhood |
| MF | GO:1901265 | nucleoside phosphate binding | IEP | Neighborhood |
| BP | GO:1901360 | organic cyclic compound metabolic process | IEP | Neighborhood |
| MF | GO:1901363 | heterocyclic compound binding | IEP | Neighborhood |
| InterPro domains | Description | Start | Stop |
|---|---|---|---|
| IPR003772 | YceD | 148 | 292 |
| No external refs found! |