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  5. Solyc02g021650.3.1

Solyc02g021650.3.1


Description : component DDB1 of UV-damaged DNA-binding protein (UV-DDB) heterodimer. core adaptor component DDB1 of COP10-DET1 (CDD) subcomplex. core adapter component (DDB1) of CUL4-DDB1 ubiquitination complex


Gene families : OG0003490 (Archaeplastida) Phylogenetic Tree(s): OG0003490_tree ,
OG_05_0005531 (LandPlants) Phylogenetic Tree(s): OG_05_0005531_tree ,
OG_06_0005427 (SeedPlants) Phylogenetic Tree(s): OG_06_0005427_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc02g021650.3.1
Cluster HCCA: Cluster_252

Target Alias Description ECC score Gene Family Method Actions
AT4G05420 DDB1A damaged DNA binding protein 1A 0.05 Archaeplastida
AT4G21100 DDB1B damaged DNA binding protein 1B 0.05 Archaeplastida
Cpa|evm.model.tig00000851.24 No alias Protein degradation.peptide tagging.Ubiquitin... 0.01 Archaeplastida
Cre10.g432000 No alias Protein degradation.peptide tagging.Ubiquitin... 0.05 Archaeplastida
GSVIVT01021587001 No alias Protein degradation.peptide tagging.Ubiquitin... 0.03 Archaeplastida
Gb_27300 No alias component DDB1 of UV-damaged DNA-binding protein... 0.03 Archaeplastida
Gb_36569 No alias component DDB1 of UV-damaged DNA-binding protein... 0.03 Archaeplastida
LOC_Os05g51480.1 No alias component DDB1 of UV-damaged DNA-binding protein... 0.09 Archaeplastida
MA_41156g0010 No alias component DDB1 of UV-damaged DNA-binding protein... 0.04 Archaeplastida
Mp4g15990.1 No alias component DDB1 of UV-damaged DNA-binding protein... 0.04 Archaeplastida
Pp3c9_22270V3.1 No alias damaged DNA binding protein 1A 0.05 Archaeplastida
Smo145521 No alias Protein degradation.peptide tagging.Ubiquitin... 0.07 Archaeplastida
Zm00001e026665_P002 No alias component DDB1 of UV-damaged DNA-binding protein... 0.06 Archaeplastida
Zm00001e032569_P002 No alias component DDB1 of UV-damaged DNA-binding protein... 0.03 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
CC GO:0005634 nucleus IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0000096 sulfur amino acid metabolic process IEP Neighborhood
BP GO:0000097 sulfur amino acid biosynthetic process IEP Neighborhood
MF GO:0000166 nucleotide binding IEP Neighborhood
BP GO:0000375 RNA splicing, via transesterification reactions IEP Neighborhood
BP GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile IEP Neighborhood
BP GO:0000398 mRNA splicing, via spliceosome IEP Neighborhood
MF GO:0001882 nucleoside binding IEP Neighborhood
MF GO:0001883 purine nucleoside binding IEP Neighborhood
MF GO:0003714 transcription corepressor activity IEP Neighborhood
MF GO:0003723 RNA binding IEP Neighborhood
MF GO:0003871 5-methyltetrahydropteroyltriglutamate-homocysteine S-methyltransferase activity IEP Neighborhood
MF GO:0003924 GTPase activity IEP Neighborhood
MF GO:0004386 helicase activity IEP Neighborhood
MF GO:0005049 nuclear export signal receptor activity IEP Neighborhood
MF GO:0005515 protein binding IEP Neighborhood
MF GO:0005524 ATP binding IEP Neighborhood
MF GO:0005525 GTP binding IEP Neighborhood
CC GO:0005643 nuclear pore IEP Neighborhood
BP GO:0006520 cellular amino acid metabolic process IEP Neighborhood
BP GO:0006555 methionine metabolic process IEP Neighborhood
BP GO:0006913 nucleocytoplasmic transport IEP Neighborhood
BP GO:0008064 regulation of actin polymerization or depolymerization IEP Neighborhood
MF GO:0008144 drug binding IEP Neighborhood
MF GO:0008172 S-methyltransferase activity IEP Neighborhood
MF GO:0008233 peptidase activity IEP Neighborhood
BP GO:0008380 RNA splicing IEP Neighborhood
MF GO:0008536 Ran GTPase binding IEP Neighborhood
BP GO:0009066 aspartate family amino acid metabolic process IEP Neighborhood
BP GO:0009067 aspartate family amino acid biosynthetic process IEP Neighborhood
BP GO:0009086 methionine biosynthetic process IEP Neighborhood
BP GO:0016070 RNA metabolic process IEP Neighborhood
MF GO:0016462 pyrophosphatase activity IEP Neighborhood
MF GO:0016787 hydrolase activity IEP Neighborhood
MF GO:0016817 hydrolase activity, acting on acid anhydrides IEP Neighborhood
MF GO:0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides IEP Neighborhood
MF GO:0017016 Ras GTPase binding IEP Neighborhood
MF GO:0017048 Rho GTPase binding IEP Neighborhood
MF GO:0017056 structural constituent of nuclear pore IEP Neighborhood
MF GO:0017069 snRNA binding IEP Neighborhood
MF GO:0017070 U6 snRNA binding IEP Neighborhood
MF GO:0017076 purine nucleotide binding IEP Neighborhood
MF GO:0017111 nucleoside-triphosphatase activity IEP Neighborhood
MF GO:0019001 guanyl nucleotide binding IEP Neighborhood
MF GO:0019899 enzyme binding IEP Neighborhood
MF GO:0030554 adenyl nucleotide binding IEP Neighborhood
MF GO:0030623 U5 snRNA binding IEP Neighborhood
BP GO:0030832 regulation of actin filament length IEP Neighborhood
BP GO:0030833 regulation of actin filament polymerization IEP Neighborhood
MF GO:0031267 small GTPase binding IEP Neighborhood
BP GO:0032271 regulation of protein polymerization IEP Neighborhood
BP GO:0032535 regulation of cellular component size IEP Neighborhood
MF GO:0032549 ribonucleoside binding IEP Neighborhood
MF GO:0032550 purine ribonucleoside binding IEP Neighborhood
MF GO:0032553 ribonucleotide binding IEP Neighborhood
MF GO:0032555 purine ribonucleotide binding IEP Neighborhood
MF GO:0032559 adenyl ribonucleotide binding IEP Neighborhood
MF GO:0032561 guanyl ribonucleotide binding IEP Neighborhood
BP GO:0032956 regulation of actin cytoskeleton organization IEP Neighborhood
BP GO:0032970 regulation of actin filament-based process IEP Neighborhood
BP GO:0033043 regulation of organelle organization IEP Neighborhood
CC GO:0033643 host cell part IEP Neighborhood
CC GO:0033646 host intracellular part IEP Neighborhood
CC GO:0033647 host intracellular organelle IEP Neighborhood
CC GO:0033648 host intracellular membrane-bounded organelle IEP Neighborhood
MF GO:0035639 purine ribonucleoside triphosphate binding IEP Neighborhood
MF GO:0036094 small molecule binding IEP Neighborhood
CC GO:0042025 host cell nucleus IEP Neighborhood
MF GO:0042085 5-methyltetrahydropteroyltri-L-glutamate-dependent methyltransferase activity IEP Neighborhood
MF GO:0043167 ion binding IEP Neighborhood
MF GO:0043168 anion binding IEP Neighborhood
BP GO:0043254 regulation of protein complex assembly IEP Neighborhood
BP GO:0044087 regulation of cellular component biogenesis IEP Neighborhood
CC GO:0044217 other organism part IEP Neighborhood
BP GO:0044272 sulfur compound biosynthetic process IEP Neighborhood
CC GO:0044428 nuclear part IEP Neighborhood
MF GO:0044877 protein-containing complex binding IEP Neighborhood
BP GO:0046907 intracellular transport IEP Neighborhood
MF GO:0048365 Rac GTPase binding IEP Neighborhood
MF GO:0051020 GTPase binding IEP Neighborhood
BP GO:0051128 regulation of cellular component organization IEP Neighborhood
BP GO:0051169 nuclear transport IEP Neighborhood
BP GO:0051493 regulation of cytoskeleton organization IEP Neighborhood
BP GO:0051641 cellular localization IEP Neighborhood
BP GO:0051649 establishment of localization in cell IEP Neighborhood
MF GO:0070011 peptidase activity, acting on L-amino acid peptides IEP Neighborhood
BP GO:0090066 regulation of anatomical structure size IEP Neighborhood
MF GO:0097367 carbohydrate derivative binding IEP Neighborhood
BP GO:0110053 regulation of actin filament organization IEP Neighborhood
MF GO:0140104 molecular carrier activity IEP Neighborhood
MF GO:0140142 nucleocytoplasmic carrier activity IEP Neighborhood
MF GO:1901265 nucleoside phosphate binding IEP Neighborhood
BP GO:1902903 regulation of supramolecular fiber organization IEP Neighborhood
InterPro domains Description Start Stop
IPR004871 Cleavage/polyA-sp_fac_asu_C 751 1064
No external refs found!