1. Home
  2. Species
  3. Solanum lycopersicum
  4. Sequence
  5. Solyc02g032035.1.1

Solyc02g032035.1.1


Description : Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum (sp|p10978|polx_tobac : 235.0)


Gene families : OG0001067 (Archaeplastida) Phylogenetic Tree(s): OG0001067_tree ,
OG_05_0000560 (LandPlants) Phylogenetic Tree(s): OG_05_0000560_tree ,
OG_06_0014590 (SeedPlants) Phylogenetic Tree(s): OG_06_0014590_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc02g032035.1.1
Cluster HCCA: Cluster_76

Target Alias Description ECC score Gene Family Method Actions
Gb_02022 No alias Retrovirus-related Pol polyprotein from transposon TNT... 0.03 Archaeplastida
Gb_13769 No alias Retrovirus-related Pol polyprotein from transposon TNT... 0.03 Archaeplastida
Gb_21061 No alias Retrovirus-related Pol polyprotein from transposon TNT... 0.03 Archaeplastida
Gb_28731 No alias Retrovirus-related Pol polyprotein from transposon TNT... 0.03 Archaeplastida
Solyc06g011275.1.1 No alias Retrovirus-related Pol polyprotein from transposon TNT... 0.04 Archaeplastida
Solyc07g049567.1.1 No alias Retrovirus-related Pol polyprotein from transposon TNT... 0.05 Archaeplastida
Solyc10g061885.1.1 No alias no hits & (original description: none) 0.03 Archaeplastida
Solyc11g061755.1.1 No alias Retrovirus-related Pol polyprotein from transposon TNT... 0.03 Archaeplastida
Solyc11g150135.1.1 No alias Retrovirus-related Pol polyprotein from transposon TNT... 0.03 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
Toggle parental
Type GO Term Name Evidence Source
BP GO:0015074 DNA integration IEP Neighborhood
BP GO:0016579 protein deubiquitination IEP Neighborhood
MF GO:0019783 ubiquitin-like protein-specific protease activity IEP Neighborhood
MF GO:0036459 thiol-dependent ubiquitinyl hydrolase activity IEP Neighborhood
BP GO:0070646 protein modification by small protein removal IEP Neighborhood
BP GO:0070647 protein modification by small protein conjugation or removal IEP Neighborhood
MF GO:0101005 ubiquitinyl hydrolase activity IEP Neighborhood

No InterPro domains available for this sequence

No external refs found!