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  5. AMTR_s00022p00198330

AMTR_s00022p00198330 (evm_27.TU.AmTr_v1.0_sc...)


Aliases : evm_27.TU.AmTr_v1.0_scaffold00022.228

Description : RNA biosynthesis.transcriptional activation.SBP transcription factor


Gene families : OG0000102 (Archaeplastida) Phylogenetic Tree(s): OG0000102_tree ,
OG_05_0000092 (LandPlants) Phylogenetic Tree(s): OG_05_0000092_tree ,
OG_06_0000075 (SeedPlants) Phylogenetic Tree(s): OG_06_0000075_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00022p00198330
Cluster HCCA: Cluster_122

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00106p00142470 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.SBP... 0.04 Archaeplastida
AMTR_s00106p00142740 evm_27.TU.AmTr_v1... No description available 0.05 Archaeplastida
AMTR_s00106p00144050 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.SBP... 0.03 Archaeplastida
AT1G02065 SPL8 squamosa promoter binding protein-like 8 0.04 Archaeplastida
AT1G27360 SPL11 squamosa promoter-like 11 0.03 Archaeplastida
AT1G27370 SPL10 squamosa promoter binding protein-like 10 0.03 Archaeplastida
AT2G42200 AtSPL9, SPL9 squamosa promoter binding protein-like 9 0.06 Archaeplastida
Cre02.g104700 No alias RNA biosynthesis.transcriptional activation.SBP... 0.01 Archaeplastida
Cre02.g112750 No alias RNA biosynthesis.transcriptional activation.SBP... 0.01 Archaeplastida
GSVIVT01003836001 No alias RNA biosynthesis.transcriptional activation.SBP... 0.05 Archaeplastida
GSVIVT01018204001 No alias RNA biosynthesis.transcriptional activation.SBP... 0.03 Archaeplastida
GSVIVT01018205001 No alias RNA biosynthesis.transcriptional activation.SBP... 0.05 Archaeplastida
Gb_02576 No alias transcription factor (SBP) 0.02 Archaeplastida
Gb_03922 No alias transcription factor (SBP) 0.05 Archaeplastida
Gb_15605 No alias transcription factor (SBP) 0.06 Archaeplastida
Gb_22010 No alias transcription factor (SBP) 0.04 Archaeplastida
Gb_27198 No alias transcription factor (SBP) 0.04 Archaeplastida
Gb_37539 No alias transcription factor (SBP) 0.02 Archaeplastida
Gb_38013 No alias transcription factor (SBP) 0.06 Archaeplastida
Gb_38014 No alias no hits & (original description: none) 0.05 Archaeplastida
LOC_Os04g46580.1 No alias transcription factor (SBP) 0.03 Archaeplastida
LOC_Os06g44860.1 No alias transcription factor (SBP) 0.02 Archaeplastida
LOC_Os07g32170.1 No alias transcription factor (SBP) 0.06 Archaeplastida
LOC_Os08g39890.1 No alias transcription factor (SBP) 0.03 Archaeplastida
LOC_Os08g41940.1 No alias transcription factor (SBP) 0.03 Archaeplastida
LOC_Os09g31438.1 No alias transcription factor (SBP) 0.03 Archaeplastida
LOC_Os09g32944.1 No alias transcription factor (SBP) 0.05 Archaeplastida
LOC_Os11g30370.1 No alias transcription factor (SBP) 0.02 Archaeplastida
MA_10435426g0010 No alias transcription factor (SBP) 0.04 Archaeplastida
MA_3179g0020 No alias transcription factor (SBP) 0.04 Archaeplastida
MA_383231g0010 No alias no hits & (original description: none) 0.02 Archaeplastida
MA_47367g0010 No alias transcription factor (SBP) 0.02 Archaeplastida
MA_92489g0010 No alias transcription factor (SBP) 0.03 Archaeplastida
Mp1g10020.1 No alias transcription factor (SBP) 0.03 Archaeplastida
Mp1g10030.1 No alias transcription factor (SBP) 0.04 Archaeplastida
Pp3c16_7490V3.1 No alias squamosa promoter binding protein-like 2 0.04 Archaeplastida
Pp3c25_8630V3.1 No alias squamosa promoter binding protein-like 2 0.05 Archaeplastida
Pp3c5_22750V3.1 No alias squamosa promoter binding protein-like 8 0.02 Archaeplastida
Smo79699 No alias RNA biosynthesis.transcriptional activation.SBP... 0.02 Archaeplastida
Solyc01g090730.3.1 No alias transcription factor (SBP) 0.02 Archaeplastida
Solyc02g077920.4.1 No alias transcription factor (SBP) 0.04 Archaeplastida
Solyc05g015840.3.1 No alias transcription factor (SBP) 0.03 Archaeplastida
Solyc07g062980.4.1 No alias transcription factor (SBP) 0.03 Archaeplastida
Solyc10g009080.4.1 No alias no hits & (original description: none) 0.03 Archaeplastida
Solyc10g018780.3.1 No alias transcription factor (SBP) 0.04 Archaeplastida
Solyc10g078700.3.1 No alias transcription factor (SBP) 0.03 Archaeplastida
Zm00001e006686_P001 No alias transcription factor (SBP) 0.04 Archaeplastida
Zm00001e010124_P002 No alias transcription factor (SBP) 0.01 Archaeplastida
Zm00001e010443_P001 No alias transcription factor (SBP) 0.03 Archaeplastida
Zm00001e013795_P002 No alias transcription factor (SBP) 0.02 Archaeplastida
Zm00001e018817_P003 No alias transcription factor (SBP) 0.02 Archaeplastida
Zm00001e025110_P001 No alias transcription factor (SBP) 0.02 Archaeplastida
Zm00001e025234_P001 No alias transcription factor (SBP) 0.04 Archaeplastida
Zm00001e028442_P002 No alias transcription factor (SBP) 0.02 Archaeplastida
Zm00001e034537_P001 No alias transcription factor (SBP) 0.02 Archaeplastida
Zm00001e034628_P001 No alias transcription factor (SBP) 0.03 Archaeplastida
Zm00001e041526_P001 No alias transcription factor (SBP) 0.03 Archaeplastida
Zm00001e041822_P001 No alias transcription factor (SBP) 0.02 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA Interproscan
CC GO:0005634 nucleus IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0000154 rRNA modification IEP Neighborhood
MF GO:0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity IEP Neighborhood
MF GO:0003700 DNA-binding transcription factor activity IEP Neighborhood
MF GO:0003824 catalytic activity IEP Neighborhood
MF GO:0004175 endopeptidase activity IEP Neighborhood
MF GO:0004190 aspartic-type endopeptidase activity IEP Neighborhood
MF GO:0004252 serine-type endopeptidase activity IEP Neighborhood
MF GO:0004553 hydrolase activity, hydrolyzing O-glycosyl compounds IEP Neighborhood
MF GO:0005337 nucleoside transmembrane transporter activity IEP Neighborhood
MF GO:0005507 copper ion binding IEP Neighborhood
CC GO:0005618 cell wall IEP Neighborhood
BP GO:0005975 carbohydrate metabolic process IEP Neighborhood
BP GO:0006508 proteolysis IEP Neighborhood
BP GO:0008150 biological_process IEP Neighborhood
BP GO:0008152 metabolic process IEP Neighborhood
MF GO:0008233 peptidase activity IEP Neighborhood
MF GO:0008649 rRNA methyltransferase activity IEP Neighborhood
MF GO:0015932 nucleobase-containing compound transmembrane transporter activity IEP Neighborhood
MF GO:0016433 rRNA (adenine) methyltransferase activity IEP Neighborhood
MF GO:0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen IEP Neighborhood
MF GO:0016706 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors IEP Neighborhood
MF GO:0016757 transferase activity, transferring glycosyl groups IEP Neighborhood
MF GO:0016758 transferase activity, transferring hexosyl groups IEP Neighborhood
MF GO:0016787 hydrolase activity IEP Neighborhood
MF GO:0016798 hydrolase activity, acting on glycosyl bonds IEP Neighborhood
BP GO:0019538 protein metabolic process IEP Neighborhood
CC GO:0030312 external encapsulating structure IEP Neighborhood
MF GO:0042802 identical protein binding IEP Neighborhood
BP GO:0043086 negative regulation of catalytic activity IEP Neighborhood
BP GO:0043170 macromolecule metabolic process IEP Neighborhood
BP GO:0044092 negative regulation of molecular function IEP Neighborhood
BP GO:0044238 primary metabolic process IEP Neighborhood
BP GO:0050790 regulation of catalytic activity IEP Neighborhood
MF GO:0051213 dioxygenase activity IEP Neighborhood
BP GO:0065009 regulation of molecular function IEP Neighborhood
MF GO:0070001 aspartic-type peptidase activity IEP Neighborhood
MF GO:0070011 peptidase activity, acting on L-amino acid peptides IEP Neighborhood
BP GO:0071704 organic substance metabolic process IEP Neighborhood
MF GO:0140102 catalytic activity, acting on a rRNA IEP Neighborhood
MF GO:0140110 transcription regulator activity IEP Neighborhood
MF GO:1901505 carbohydrate derivative transmembrane transporter activity IEP Neighborhood
InterPro domains Description Start Stop
IPR004333 SBP_dom 54 129
No external refs found!