Solyc02g033050.3.1

Description : RDR2-polymerase regulator protein CLSY3/4

Gene families : OG0000450 (Archaeplastida) Phylogenetic Tree(s): OG0000450_tree ,
OG_05_0000597 (LandPlants) Phylogenetic Tree(s): OG_05_0000597_tree ,
OG_06_0000338 (SeedPlants) Phylogenetic Tree(s): OG_06_0000338_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Solyc02g033050.3.1
Cluster	HCCA: Cluster_115

Target	Alias	Description	ECC score	Gene Family Method
AT2G21455	No alias	No description available	0.03	Archaeplastida
GSVIVT01013277001	No alias	RNA biosynthesis.siRNA biogenesis.CLSY3/4 regulator protein	0.03	Archaeplastida
Solyc01g068293.1.1	No alias	RDR2-polymerase regulator protein CLSY3/4	0.03	Archaeplastida
Solyc01g068320.3.1	No alias	RDR2-polymerase regulator protein CLSY3/4	0.04	Archaeplastida
Solyc08g061390.3.1	No alias	SNF2 domain-containing protein CLASSY 3 OS=Arabidopsis...	0.09	Archaeplastida
Solyc08g061400.1.1	No alias	SNF2 domain-containing protein CLASSY 3 OS=Arabidopsis...	0.06	Archaeplastida
Solyc08g061410.3.1	No alias	RDR2-polymerase regulator protein CLSY3/4	0.09	Archaeplastida
Solyc08g077590.1.1	No alias	SNF2 domain-containing protein CLASSY 3 OS=Arabidopsis...	0.07	Archaeplastida
Solyc08g077610.3.1	No alias	RDR2-polymerase regulator protein CLSY3/4	0.02	Archaeplastida
Solyc08g077640.3.1	No alias	no hits & (original description: none)	0.09	Archaeplastida
Solyc08g077650.1.1	No alias	no hits & (original description: none)	0.04	Archaeplastida
Solyc08g077660.1.1	No alias	no hits & (original description: none)	0.02	Archaeplastida

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0005524	ATP binding	IEA	Interproscan
MF	GO:0008144	drug binding	None	Extended
MF	GO:0017076	purine nucleotide binding	None	Extended
MF	GO:0030554	adenyl nucleotide binding	None	Extended
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032559	adenyl ribonucleotide binding	None	Extended
MF	GO:0035639	purine ribonucleoside triphosphate binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

Type	GO Term	Name	Evidence	Source
MF	GO:0003824	catalytic activity	IEP	Neighborhood
MF	GO:0004252	serine-type endopeptidase activity	IEP	Neighborhood
MF	GO:0005506	iron ion binding	IEP	Neighborhood
MF	GO:0008146	sulfotransferase activity	IEP	Neighborhood
MF	GO:0016491	oxidoreductase activity	IEP	Neighborhood
MF	GO:0016705	oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen	IEP	Neighborhood
MF	GO:0016740	transferase activity	IEP	Neighborhood
MF	GO:0016746	transferase activity, transferring acyl groups	IEP	Neighborhood
MF	GO:0016747	transferase activity, transferring acyl groups other than amino-acyl groups	IEP	Neighborhood
MF	GO:0016782	transferase activity, transferring sulfur-containing groups	IEP	Neighborhood
MF	GO:0020037	heme binding	IEP	Neighborhood
MF	GO:0043169	cation binding	IEP	Neighborhood
MF	GO:0046872	metal ion binding	IEP	Neighborhood
MF	GO:0046906	tetrapyrrole binding	IEP	Neighborhood
MF	GO:0046914	transition metal ion binding	IEP	Neighborhood
MF	GO:0048037	cofactor binding	IEP	Neighborhood
BP	GO:0055114	oxidation-reduction process	IEP	Neighborhood

InterPro domains	Description	Start	Stop
IPR000330	SNF2_N	116	371
IPR001650	Helicase_C	434	539

External Links

No external refs found!