Solyc02g060570.1.1


Description : autophagic adaptor protein (DSK2)


Gene families : OG0001786 (Archaeplastida) Phylogenetic Tree(s): OG0001786_tree ,
OG_05_0008673 (LandPlants) Phylogenetic Tree(s): OG_05_0008673_tree ,
OG_06_0005664 (SeedPlants) Phylogenetic Tree(s): OG_06_0005664_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc02g060570.1.1
Cluster HCCA: Cluster_17

Target Alias Description ECC score Gene Family Method Actions
GSVIVT01003843001 No alias Ubiquitin domain-containing protein DSK2b OS=Arabidopsis thaliana 0.02 Archaeplastida
GSVIVT01023890001 No alias Ubiquitin domain-containing protein DSK2b OS=Arabidopsis thaliana 0.03 Archaeplastida
Solyc02g060595.1.1 No alias no hits & (original description: none) 0.05 Archaeplastida
Solyc02g061665.1.1 No alias no hits & (original description: none) 0.04 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA Interproscan
Type GO Term Name Evidence Source
CC GO:0000228 nuclear chromosome IEP Neighborhood
MF GO:0004175 endopeptidase activity IEP Neighborhood
MF GO:0004252 serine-type endopeptidase activity IEP Neighborhood
CC GO:0005694 chromosome IEP Neighborhood
BP GO:0006338 chromatin remodeling IEP Neighborhood
BP GO:0006508 proteolysis IEP Neighborhood
MF GO:0008233 peptidase activity IEP Neighborhood
MF GO:0008236 serine-type peptidase activity IEP Neighborhood
MF GO:0017171 serine hydrolase activity IEP Neighborhood
CC GO:0031011 Ino80 complex IEP Neighborhood
CC GO:0033202 DNA helicase complex IEP Neighborhood
CC GO:0044428 nuclear part IEP Neighborhood
CC GO:0044454 nuclear chromosome part IEP Neighborhood
MF GO:0070011 peptidase activity, acting on L-amino acid peptides IEP Neighborhood
CC GO:0070603 SWI/SNF superfamily-type complex IEP Neighborhood
CC GO:0097346 INO80-type complex IEP Neighborhood
CC GO:1904949 ATPase complex IEP Neighborhood
InterPro domains Description Start Stop
IPR000626 Ubiquitin_dom 26 93
No external refs found!